Browse Element(s) Details


Os.1021.1.S1_at

Description gb:AK065375.1
DB_XREF= gi:32975393
TID=Os.1021.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.1021 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0046B10.19 (P0046B10.19), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013008L21, full insert sequence.
FL= gb:AK065375.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g427109/11LSD1 zinc finger family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g42670OsAffx.23638.1.S1_at9/111+24596639..24599250hypothetical protein
LOC_Os01g42670OsAffx.23637.1.S1_at2/111+24596639..24599250hypothetical protein
LOC_Os01g42679NANA1+24599981..24600723NA
LOC_Os01g42690Os.35061.1.S1_at11/111+24603943..24607847Phospholipase/Carboxylesterase family protein, expressed
LOC_Os01g42690Os.35061.2.S1_at11/111+24603943..24607847Phospholipase/Carboxylesterase family protein, expressed
LOC_Os01g42690Os.35061.2.S1_x_at11/111+24603943..24607847Phospholipase/Carboxylesterase family protein, expressed
LOC_Os01g42700Os.8697.1.S2_at11/111+24609589..24612154expressed protein
LOC_Os01g42700Os.8697.1.S1_at11/111+24609589..24612154expressed protein
LOC_Os01g42710Os.1021.1.S1_at9/111+24619385..24626543LSD1 zinc finger family protein, expressed
LOC_Os01g42720Os.34525.2.S1_x_at11/111+24626992..24628080expressed protein
LOC_Os01g42720Os.34525.2.S1_at11/111+24626992..24628080expressed protein
LOC_Os01g42720OsAffx.11445.1.S1_s_at11/111+24626992..24628080expressed protein
LOC_Os01g42720Os.34525.1.S1_s_at11/111+24626992..24628080expressed protein
LOC_Os01g42720Os.34525.1.S1_x_at11/111+24626992..24628080expressed protein
LOC_Os01g42730Os.41283.1.S1_at8/111+24639449..24644008GDSL-like Lipase/Acylhydrolase family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0000303biological_processresponse to superoxide
GO:0008219biological_processcell death
GO:0009618biological_processresponse to pathogenic bacteria
GO:0009862biological_processsystemic acquired resistance, salicylic acid mediated signaling pathway
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.1021.1.S1_at--291--8211Chr01:24625949..24625973 (25 bp)
GGAATGTTCGCCGTCGGTTATCAAT
LOC_Os01g42710
Os.1021.1.S1_at--862--1431Chr01:24625987..24626011 (25 bp)
AGAACTAACTCATCAGGGCTAGCTG
LOC_Os01g42710
Os.1021.1.S1_at--348--8971Chr01:24626010..24626034 (25 bp)
TGAAGCCTGATCAGTTCTGGTCCCA
LOC_Os01g42710
Os.1021.1.S1_at--551--4331Chr01:24626032..24626056 (25 bp)
CCATGTACCCATCGGATTCCAAGAA
LOC_Os01g42710
Os.1021.1.S1_at--507--1471Chr01:24626088..24626112 (25 bp)
AGAATGTTCGCCCTTCGTCATGAGG
LOC_Os01g42710
Os.1021.1.S1_at--388--2851Chr01:24626195..24626219 (25 bp)
AAGGTGACCTTGTTAGTACGACTAG
LOC_Os01g42710
Os.1021.1.S1_at--276--10311Chr01:24626309..24626333 (25 bp)
TTTCAGATGGTTCTTTCGCGGTGAC
LOC_Os01g42710
Os.1021.1.S1_at--449--9111Chr01:24626377..24626401 (25 bp)
TGCTGCTAATCGTGCTTTAGGCCAT
LOC_Os01g42710
Os.1021.1.S1_at--652--10091Chr01:24626394..24626418 (25 bp)
TAGGCCATCATTGCTGTAGACACTT
LOC_Os01g42710
Os.1021.1.S1_at--995--7651NONE
GGGATTGCTCAGACTTACTTTCAGA
NONE
Os.1021.1.S1_at--638--9891NONE
TACTTTCAGAGTCCGGTCTGTGGTA
NONE
Target Sequence 
GGAATGTTCGCCGTCGGTTATCAATCGAGCAACCCACAAGAACTAACTCATCAGGGCTAGCTGAAGCCTGATCAGTTCTG
GTCCCATGTACCCATCGGATTCCAAGAAAGCTTCAAATGCTAATGTGGATGAAAGGAACAGAATGTTCGCCCTTCGTCAT
GAGGTGTGGGCATGAAAGTTCAAGATGGTATGGACAAGCCAAAGTGTACAAAGATAGCGTTTTTTTTTTNNCATTGATGT
AGACAGGAAAGGTGACCTTGTTAGTACGACTAGATNTCCTTTGAAAGGGAAAATAAAAGAAAAATAGTTCGATTCAANNN
NNANNNNANANNNGTATGTCATATGAATGATAACAGAGTAGTTTTCAGATGGTTCTTTCGCGGTGACCATCATGTTGCCC
CCNGACGTGTTGAGGCTTGAGAATTAGCCATGCTGCTAATCGTGCTTTAGGCCATCATTGCTGTAGACACTTTTGCAGGG
GATTGCTCAGACTTACTTTCAGAGTCCGGTCTGTGGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.1021.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis