Browse Element(s) Details

Os.10226.1.A1_at

Description

gb:CB676944
DB_XREF= gi:29680669
DB_XREF=OSJNEe13H21.r
CLONE=OSJNEe13H21
TID=Os.10226.1
CNT=2
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.10226 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os07g17260	11/11	retrotransposon protein, putative, Ty1-copia subclass, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os07g17230	OsAffx.16307.1.S1_at	11/11	7	+	10153757..10158080	B3 DNA binding domain containing protein, expressed
LOC_Os07g17240	Os.35344.3.S1_x_at	9/11	7	+	10160360..10166992	transposon protein, putative, Mutator sub-class
LOC_Os07g17240	Os.35344.18.S1_x_at	9/11	7	+	10160360..10166992	transposon protein, putative, Mutator sub-class
LOC_Os07g17240	OsAffx.22940.2.S1_s_at	8/11	7	+	10160360..10166992	transposon protein, putative, Mutator sub-class
LOC_Os07g17240	OsAffx.22940.3.S1_x_at	6/11	7	+	10160360..10166992	transposon protein, putative, Mutator sub-class
LOC_Os07g17240	OsAffx.22940.5.S1_x_at	4/11	7	+	10160360..10166992	transposon protein, putative, Mutator sub-class
LOC_Os07g17240	OsAffx.22940.1.S1_s_at	2/11	7	+	10160360..10166992	transposon protein, putative, Mutator sub-class
LOC_Os07g17250	Os.52237.1.S1_at	11/11	7	+	10171462..10175056	NB-ARC domain containing protein, expressed
LOC_Os07g17260	Os.10226.1.A1_at	11/11	7	+	10176922..10186734	retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os07g17260	Os.45957.4.S1_x_at	6/11	7	+	10176922..10186734	retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os07g17260	Os.24327.1.A1_at	1/11	7	+	10176922..10186734	retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os07g17260	Os.49134.1.S1_at	1/11	7	+	10176922..10186734	retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os07g17270	Os.49134.2.S1_x_at	11/11	7	+	10189134..10196114	retrotransposon protein, putative, unclassified
LOC_Os07g17270	Os.49134.2.S1_at	11/11	7	+	10189134..10196114	retrotransposon protein, putative, unclassified
LOC_Os07g17270	Os.31662.1.S1_at	1/11	7	+	10189134..10196114	retrotransposon protein, putative, unclassified
LOC_Os07g17270	Os.55230.1.S1_x_at	1/11	7	+	10189134..10196114	retrotransposon protein, putative, unclassified
LOC_Os07g17280	Os.49134.2.S1_x_at	8/11	7	+	10203325..10207221	Ser/Thr protein phosphatase family protein, expressed
LOC_Os07g17280	Os.49134.2.S1_at	6/11	7	+	10203325..10207221	Ser/Thr protein phosphatase family protein, expressed
LOC_Os07g17290	Os.34131.1.S1_s_at	9/11	7	+	10209817..10211952	hAT family dimerisation domain containing protein

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
NONE	NONE	NONE

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.10226.1.A1_at--497--123	1	Chr07:10177538..10177562 (25 bp)	AGTTCTGCCACACCCGGATCATTGT	LOC_Os07g17260
Os.10226.1.A1_at--80--797	1	Chr07:10177553..10177577 (25 bp)	GGATCATTGTCCTCATTGTGACCAA	LOC_Os07g17260
Os.10226.1.A1_at--806--1069	1	Chr07:10177599..10177623 (25 bp)	TTGCTTACAAACTGTCTCTTCGCGA	LOC_Os07g17260
Os.10226.1.A1_at--437--575	1	Chr07:10177776..10177800 (25 bp)	GACGTTTTGGAAGCATCGGAACCGT	LOC_Os07g17260
Os.10226.1.A1_at--844--943	1	Chr07:10177791..10177815 (25 bp)	TCGGAACCGTTGTGTTTCTGATGGG	LOC_Os07g17260
Os.10226.1.A1_at--440--789	1	Chr07:10177815..10177839 (25 bp)	GGTTAATCCTAACTTGGCCAGTGCT	LOC_Os07g17260
Os.10226.1.A1_at--407--251	1	Chr07:10177825..10177849 (25 bp)	AACTTGGCCAGTGCTCTTATTCTTG	LOC_Os07g17260
Os.10226.1.A1_at--403--111	1	Chr07:10177914..10177938 (25 bp)	AGTGTTGGGTGGTTAGTCTCAGATC	LOC_Os07g17260
Os.10226.1.A1_at--500--115	2	Chr07:10177928..10177952 (25 bp)	AGTCTCAGATCATGGTTTGGTTTGT	LOC_Os07g17260
Os.10226.1.A1_at--305--769	1	Chr07:10177969..10177993 (25 bp)	GGGTTTGCGACATACATGGTTCCTA	LOC_Os07g17260
Os.10226.1.A1_at--629--203	1	Chr07:10177996..10178020 (25 bp)	ACTTAGTGTGTGTGCGTTTGGTTTT	LOC_Os07g17260

Target Sequence

AGTTCTGCCACACCCGGATCATTGTCCTCATTGTGACCAACAGGACGAAACAATTGATCACTTGCTTACAAACTGTCTCT
TCGCGAGACAATTTTGGTACTCCCTCCTACAGCGGTTTGGCCTGAATTCTTTGCCCCCCTTGAATGACGATCAATTTTGA
GTGGTGAAACAGGATCAATGAGGCAACTAATGGTTCGGTGCAAAATGGACTTAATTCTATAGTAATTCTTGGTGTTTGGA
CGTTTTGGAAGCATCGGAACCGTTGTGTTTCTGATGGGGTTAATCCTAACTTGGCCAGTGCTCTTATTCTTGCTGAGGAG
AAAGGACGGCTGTGGTGTTTGGCCAGGGCTCGGGGGCTATCCTTTTATATTGCCAAAGTGTTGGGTGGTTAGTCTCAGAT
CATGGTTTGGTTTGTGGTTGTGGTTGTGGTTGGGTTTGCGACATACATGGTTCCTAGAACTTAGTGTGTGTGCGTTTGGT
TTT

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis