Browse Element(s) Details


Os.10278.1.S1_at

Description gb:AK119757.1
DB_XREF= gi:37989380
TID=Os.10278.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.10278 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-171-D05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-171-D05, full insert sequence.
FL= gb:AK119757.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3337011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g33330Os.37531.1.S1_at8/116+19414237..19417330expressed protein
LOC_Os06g33340Os.49603.1.S1_at11/116+19417815..19420857expressed protein
LOC_Os06g33340Os.16076.1.S1_s_at11/116+19417815..19420857expressed protein
LOC_Os06g33350Os.56283.1.S1_at11/116+19426546..19430026expressed protein
LOC_Os06g33360Os.50576.1.S1_at11/116+19433825..19438090NB-ARC domain containing protein, expressed
LOC_Os06g33360Os.50576.1.S2_at11/116+19433825..19438090NB-ARC domain containing protein, expressed
LOC_Os06g33370Os.10278.1.S1_at11/116+19438053..19440383expressed protein
LOC_Os06g33370OsAffx.4987.1.S1_at3/116+19438053..19440383expressed protein
LOC_Os06g33370Os.49603.1.S1_at1/116+19438053..19440383expressed protein
LOC_Os06g33380OsAffx.15711.1.S1_at11/116+19442466..19442869hypothetical protein
LOC_Os06g33390OsAffx.27913.1.S1_at11/116+19444693..19445286expressed protein
LOC_Os06g33400OsAffx.27914.1.S1_at11/116+19447322..19447750hypothetical protein
LOC_Os06g33410OsAffx.27915.1.S1_at8/116+19453210..19454390hypothetical protein
LOC_Os06g33420OsAffx.15712.1.S1_at10/116+19456390..19459812transposase, putative

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10278.1.S1_at--486--4071Chr06:19438405..19438428 (24 bp)
CGAAAGTCCTTGCAGGCGAGCCCTC
LOC_Os06g33370
Os.10278.1.S1_at--718--3991Chr06:19438376..19438400 (25 bp)
CGTGTGAGCCGCAGCCGCCGAGCTT
LOC_Os06g33370
Os.10278.1.S1_at--1135--4211Chr06:19438368..19438392 (25 bp)
CCGCAGCCGCCGAGCTTGTGGAGCT
LOC_Os06g33370
Os.10278.1.S1_at--552--1551Chr06:19438356..19438380 (25 bp)
AGCTTGTGGAGCTCCATCTCGCTCG
LOC_Os06g33370
Os.10278.1.S1_at--127--5271Chr06:19438286..19438310 (25 bp)
GAAGGAGACACGTGGGCCTAAAATT
LOC_Os06g33370
Os.10278.1.S1_at--611--3472Chr09:17517472..17517491 (20 bp)
CATGTGGGTCCCATTTAAGGCTTGG
NONE
Os.10278.1.S1_at--390--7691Chr06:19438231..19438255 (25 bp)
GGGTCCCATTTAAGGCTTGGTGCCA
LOC_Os06g33370
Os.10278.1.S1_at--103--10492Chr02:23548875..23548894 (20 bp)
TTAAGGCTTGGTGCCACGTGGATGA
NONE
Os.10278.1.S1_at--844--3215Chr02:10207000..10207020 (21 bp)
CAACCTGCCACGTGGGATAAAACCG
NONE
Os.10278.1.S1_at--1063--8651Chr06:19438094..19438118 (25 bp)
TGTGATTCAACCAGGGACATGAGCT
LOC_Os06g33370
Os.10278.1.S1_at--455--9711Chr06:19438088..19438112 (25 bp)
TCAACCAGGGACATGAGCTGAGGGA
LOC_Os06g33370
Target Sequence 
CGAAAGTCCTTGCAGGCGAGCCCTCCCCGCGTGTGAGCCGCAGCCGCCGAGCTTGTGGAGCTCCATCTCGCTCGCTACTG
CCGCCATCCACCTGAGGGTGAGAAAGAGAGGGTAAAGAGGAAGGAGACACGTGGGCCTAAAATTTATTTTTGTTGTNTTA
CTCCACTGACATGTGGGTCCCATTTAAGGCTTGGTGCCACGTGGATGAAGACCAAGTCAACCTGCCACGTGGGATAAAAC
CGCTNGAGGAGTCGATTTGCAATGGTTTTGTAAGTTGGGGATGGGTTATACCTGGTTTTGCAATCGAGGGATGTGATTCA
ACCAGGGACATGAGCTGAGGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10278.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis