Browse Element(s) Details


Os.10292.1.S1_at

Description gb:AK066443.1
DB_XREF= gi:32976461
TID=Os.10292.1
CNT=19
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.10292 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unnamed protein product (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013067J16, full insert sequence.
FL= gb:AK066443.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g162609/11transporter, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g16220Os.24775.1.A1_s_at11/111+9176018..9178676expressed protein
LOC_Os01g16230OsAffx.23270.1.S1_at11/111+9189051..9190241Protein kinase domain containing protein
LOC_Os01g16230OsAffx.23270.1.S1_x_at11/111+9189051..9190241Protein kinase domain containing protein
LOC_Os01g16240Os.455.1.S1_at11/111+9192330..9195757Calmodulin, putative, expressed
LOC_Os01g16240Os.57504.1.S1_x_at1/111+9192330..9195757Calmodulin, putative, expressed
LOC_Os01g16250Os.49712.1.S1_at11/111+9198156..9199174expressed protein
LOC_Os01g16260Os.10292.1.S1_at9/111+9201107..9208445transporter, putative, expressed
LOC_Os01g16260Os.57395.1.S1_at1/111+9201107..9208445transporter, putative, expressed
LOC_Os01g16270NANA1+9212477..9216283retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g16280NANA1+9217884..9218306hypothetical protein
LOC_Os01g16290Os.37563.1.S1_at11/111+9222015..9233827DNA gyrase, B subunit family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
GO:0005351molecular_functionsugar porter activity
GO:0015144molecular_functioncarbohydrate transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10292.1.S1_at--455--10711Chr01:9203180..9203204 (25 bp)
TTGCTGTAACTCTGATGTCCATCTT
LOC_Os01g16260
Os.10292.1.S1_at--172--211Chr01:9202546..9202570 (25 bp)
ATTTGCATGGGCTCAAAGGCGTCAG
LOC_Os01g16260
Os.10292.1.S1_at--1032--2931Chr01:9202531..9202555 (25 bp)
AAGGCGTCAGACAGCTTCATTTCTC
LOC_Os01g16260
Os.10292.1.S1_at--719--1711Chr01:9201335..9201359 (25 bp)
ACCACCTGGTATTCTTCATGCTGAA
LOC_Os01g16260
Os.10292.1.S1_at--737--2131Chr01:9201303..9201327 (25 bp)
ACAGTCATCGGTCTTGTGAGCACTT
LOC_Os01g16260
Os.10292.1.S1_at--338--8671Chr01:9201289..9201313 (25 bp)
TGTGAGCACTTTCAGGCCGTTTTAC
LOC_Os01g16260
Os.10292.1.S1_at--249--5391Chr01:9201250..9201274 (25 bp)
GAAGCACGATCCCATTACTACTTAG
LOC_Os01g16260
Os.10292.1.S1_at--692--10011Chr01:9201228..9201252 (25 bp)
TAGCACTAACCATTCTACTCAGGAC
LOC_Os01g16260
Os.10292.1.S1_at--122--7854Chr09:2031983..2032002 (20 bp)
GGTACTCACGATTACATTGCCGAAA
NONE
Os.10292.1.S1_at--586--8417Chr11:17464141..17464167 (25 bp)
GGCCCGCAGGCAGTCTTAGAACATA
NONE
Os.10292.1.S1_at--904--3271NONE
CAAACGGTCCACAATACATGCTGTA
NONE
Target Sequence 
TTGCTGTAACTCTGATGTCCATCTTTAAAGCTATTGCTCCAGCAATTGCAGGAGCTATATTTGCATGGGCTCAAAGGCGT
CAGACAGCTTCATTTCTCCCAGGCGACCACCTGGTATTCTTCATGCTGAACNTCTTCACAGTCATCGGTCTTGTGAGCAC
TTTCAGGCCGTTTTACGCTAGAAGAAGCACGAAGCACGATCCCATTACTACTTAGCACTAACCATTCTACTCAGGACCTG
AGGTCTGATGTAGACCCCCNTTTTTATAACAGGAATCACTCGTGTTAATAGTACCATTTNCCTGGATCAAGTAGTCTGGT
ACTCACGATTACATTGCCGAAATATCAAGTGCGCATACAAAGATGGTCTAGCGCGAATTATTATATCATAGGCCCGCAGG
CAGTCTTAGAACATAGGACCAAACGGTCCACAATACATGCTGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10292.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis