Browse Element(s) Details


OsAffx.23270.1.S1_at

Description tigr:9629.m01616
TID=OsAffx.23270.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Protein kinase domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1623011/11Protein kinase domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g16190Os.12343.1.S1_at11/111+9163155..916666926S proteasome non-ATPase regulatory subunit 14, putative, expressed
LOC_Os01g16190Os.53022.1.S1_at1/111+9163155..916666926S proteasome non-ATPase regulatory subunit 14, putative, expressed
LOC_Os01g16200OsAffx.23267.1.S1_at11/111+9168430..9169701Serpin family protein
LOC_Os01g16210Os.46043.1.A1_s_at11/111+9169909..9172537Protein of unknown function, DUF614 containing protein, expressed
LOC_Os01g16210OsAffx.23268.1.S1_at11/111+9169909..9172537Protein of unknown function, DUF614 containing protein, expressed
LOC_Os01g16220Os.24775.1.A1_s_at11/111+9176018..9178676expressed protein
LOC_Os01g16230OsAffx.23270.1.S1_at11/111+9189051..9190241Protein kinase domain containing protein
LOC_Os01g16230OsAffx.23270.1.S1_x_at11/111+9189051..9190241Protein kinase domain containing protein
LOC_Os01g16240Os.455.1.S1_at11/111+9192330..9195757Calmodulin, putative, expressed
LOC_Os01g16240Os.57504.1.S1_x_at1/111+9192330..9195757Calmodulin, putative, expressed
LOC_Os01g16250Os.49712.1.S1_at11/111+9198156..9199174expressed protein
LOC_Os01g16260Os.10292.1.S1_at9/111+9201107..9208445transporter, putative, expressed
LOC_Os01g16260Os.57395.1.S1_at1/111+9201107..9208445transporter, putative, expressed
LOC_Os01g16270NANA1+9212477..9216283retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
GO:0009793biological_processembryonic development (sensu Magnoliophyta)
GO:0005886cellular_componentplasma membrane
GO:0009986cellular_componentcell surface
GO:0030139cellular_componentendocytic vesicle
GO:0016301molecular_functionkinase activity
GO:0019199molecular_functiontransmembrane receptor protein kinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23270.1.S1_at--873--491Chr01:9189657..9189681 (25 bp)
ATCGGGTACCTGGACCCGTGCTACA
LOC_Os01g16230
OsAffx.23270.1.S1_at--965--8531Chr01:9189667..9189691 (25 bp)
TGGACCCGTGCTACACGGAGCCCAG
LOC_Os01g16230
OsAffx.23270.1.S1_at--46--9671Chr01:9189748..9189772 (25 bp)
TCAGCGGCCGCAAGGTGATGGACGT
LOC_Os01g16230
OsAffx.23270.1.S1_at--741--8871Chr01:9189763..9189787 (25 bp)
TGATGGACGTGAGCGCCTCGCCGTC
LOC_Os01g16230
OsAffx.23270.1.S1_at--1070--4131Chr01:9189918..9189942 (25 bp)
CGCTGCGTGTCGGAGGCCGTGGAAC
LOC_Os01g16230
OsAffx.23270.1.S1_at--282--8433Chr05:26949261..26949432 (25 bp)
GGCCGGCGATGTCCGACGTGGTCGC
NONE
OsAffx.23270.1.S1_at--719--8731Chr01:9190054..9190078 (25 bp)
TGTACAGGCGCGTCGTGTCGTGGGC
LOC_Os01g16230
OsAffx.23270.1.S1_at--595--4651Chr01:9190080..9190104 (25 bp)
GCGTCGCGCCTGCACGTGAGGAGGA
LOC_Os01g16230
OsAffx.23270.1.S1_at--844--9131Chr01:9190111..9190135 (25 bp)
TGCGGACGAGCAAGATCGAGTGCAC
LOC_Os01g16230
OsAffx.23270.1.S1_at--521--5951Chr01:9190118..9190142 (25 bp)
GAGCAAGATCGAGTGCACGGAGCAC
LOC_Os01g16230
OsAffx.23270.1.S1_at--792--1111Chr01:9190129..9190153 (25 bp)
AGTGCACGGAGCACTCCGGGTCAGA
LOC_Os01g16230
Target Sequence 
ATCGGGTACCTGGACCCGTGCTACACGGAGCCCAGCCGCCTCGGCCCGGAGAGCGACGTGTTCAGCTTCGGCGTCGTCCT
CCTCGAGCTCGTCAGCGGCCGCAAGGTGATGGACGTGAGCGCCTCGCCGTCGTCCATCGTCGCCTGGGCCGTGCCGCTGG
TCGCCGCCGGCATGGCGCGCGAGGTGTTCGACGGGAGGCTTCCCGCGCCGCGCCGCGCCAGGGAGGAGCGCGCGGTGGCG
CGCGTGCTCGCCGTGGCCGCGCGCTGCGTGTCGGAGGCCGTGGAACGCCGGCCGGCGATGTCCGACGTGGTCGCCGAGCT
CCACGCCGCCCTCGAGAGCGCCGGCTGGCCGCGCCGCCCCCGCCGCCGCGGCGACGCGCACGGCCTCGCCGGGACGCTGT
ACAGGCGCGTCGTGTCGTGGGCCGCGTCGCGCCTGCACGTGAGGAGGAGGAGGGTGCGGACGAGCAAGATCGAGTGCACG
GAGCACTCCGGGTCAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23270.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis