Browse Element(s) Details


OsAffx.23267.1.S1_at

Description tigr:9629.m01613
TID=OsAffx.23267.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Serpin (serine protease inhibitor)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1620011/11Serpin family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g16180Os.22508.1.S1_at11/111+9156567..9162489MT-A70 family protein, expressed
LOC_Os01g16190Os.12343.1.S1_at11/111+9163155..916666926S proteasome non-ATPase regulatory subunit 14, putative, expressed
LOC_Os01g16190Os.53022.1.S1_at1/111+9163155..916666926S proteasome non-ATPase regulatory subunit 14, putative, expressed
LOC_Os01g16200OsAffx.23267.1.S1_at11/111+9168430..9169701Serpin family protein
LOC_Os01g16210Os.46043.1.A1_s_at11/111+9169909..9172537Protein of unknown function, DUF614 containing protein, expressed
LOC_Os01g16210OsAffx.23268.1.S1_at11/111+9169909..9172537Protein of unknown function, DUF614 containing protein, expressed
LOC_Os01g16220Os.24775.1.A1_s_at11/111+9176018..9178676expressed protein
LOC_Os01g16230OsAffx.23270.1.S1_at11/111+9189051..9190241Protein kinase domain containing protein
LOC_Os01g16230OsAffx.23270.1.S1_x_at11/111+9189051..9190241Protein kinase domain containing protein
LOC_Os01g16240Os.455.1.S1_at11/111+9192330..9195757Calmodulin, putative, expressed
LOC_Os01g16240Os.57504.1.S1_x_at1/111+9192330..9195757Calmodulin, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0004867molecular_functionserine-type endopeptidase inhibitor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23267.1.S1_at--846--9451Chr01:9169112..9169136 (25 bp)
TCATGACGACGGAGATCCCCTTCGA
LOC_Os01g16200
OsAffx.23267.1.S1_at--993--2671Chr01:9169174..9169198 (25 bp)
AAGCTCCCCTACAAGAACGTCGGCG
LOC_Os01g16200
OsAffx.23267.1.S1_at--392--2691Chr01:9169276..9169300 (25 bp)
AAGCTCGCCGATCTCTACGATATGG
LOC_Os01g16200
OsAffx.23267.1.S1_at--219--6391Chr01:9169285..9169309 (25 bp)
GATCTCTACGATATGGCCGTGACCA
LOC_Os01g16200
OsAffx.23267.1.S1_at--384--8871Chr01:9169355..9169379 (25 bp)
TGAGGCGGCTCATGGTCCCCAAGTT
LOC_Os01g16200
OsAffx.23267.1.S1_at--393--3231Chr01:9169374..9169398 (25 bp)
CAAGTTCAAGTTCTCGTTCAAGTTC
LOC_Os01g16200
OsAffx.23267.1.S1_at--538--10631Chr01:9169396..9169420 (25 bp)
TTCGAGGCGAAGTCCGACATGCGGA
LOC_Os01g16200
OsAffx.23267.1.S1_at--606--7631Chr01:9169478..9169502 (25 bp)
GGGACGGTCTCTTCATCGCCGAAGT
LOC_Os01g16200
OsAffx.23267.1.S1_at--501--10531Chr01:9169489..9169513 (25 bp)
TTCATCGCCGAAGTGTATCATCAGG
LOC_Os01g16200
OsAffx.23267.1.S1_at--948--6891Chr01:9169503..9169527 (25 bp)
GTATCATCAGGCCACCATCGAGGTG
LOC_Os01g16200
OsAffx.23267.1.S1_at--935--3811Chr01:9169554..9169578 (25 bp)
CTCCACCGCCGTGGTTATGATGCAA
LOC_Os01g16200
Target Sequence 
TCATGACGACGGAGATCCCCTTCGAGCGCCACGTCGCCGCCTTCCCCGGCTTCACGGCGCTCAAGCTCCCCTACAAGAAC
GTCGGCGGCGGCGGCGGTGGCGACGGCGTGCCCCGAGCCGCATTCTACATGCTCCTGCTCCTCCCCGACGGCGACGGCGC
GCTCAAGCTCGCCGATCTCTACGATATGGCCGTGACCACGCCGGAGTTCATCAAGAAGCACACGCCGGCGGCGGAGGCTC
CGGTGAGGCGGCTCATGGTCCCCAAGTTCAAGTTCTCGTTCAAGTTCGAGGCGAAGTCCGACATGCGGAAGCTGGGCGTG
ACCCGAGCTTTCGCCGGCGGCGACTTCTCCGGCATGGTGACCGGCGGGGACGGTCTCTTCATCGCCGAAGTGTATCATCA
GGCCACCATCGAGGTGGACGAGCTCGGCACCGTGGCCGCCGCCTCCACCGCCGTGGTTATGATGCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23267.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis