Browse Element(s) Details


Os.12343.1.S1_at

Description gb:AB037152.1
DB_XREF= gi:17297982
GEN=OsRPN11
TID=Os.12343.1
CNT=38
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.12343 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) OsRPN11 mRNA for 26S proteasome regulatory particle non-ATPase subunit11, complete cds.
PROD=26S proteasome regulatory particle non-ATPasesubunit11
FL= gb:AB037152.1 gb:AK099455.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1619011/1126S proteasome non-ATPase regulatory subunit 14, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g16180Os.22508.1.S1_at11/111+9156567..9162489MT-A70 family protein, expressed
LOC_Os01g16190Os.12343.1.S1_at11/111+9163155..916666926S proteasome non-ATPase regulatory subunit 14, putative, expressed
LOC_Os01g16190Os.53022.1.S1_at1/111+9163155..916666926S proteasome non-ATPase regulatory subunit 14, putative, expressed
LOC_Os01g16200OsAffx.23267.1.S1_at11/111+9168430..9169701Serpin family protein
LOC_Os01g16210Os.46043.1.A1_s_at11/111+9169909..9172537Protein of unknown function, DUF614 containing protein, expressed
LOC_Os01g16210OsAffx.23268.1.S1_at11/111+9169909..9172537Protein of unknown function, DUF614 containing protein, expressed
LOC_Os01g16220Os.24775.1.A1_s_at11/111+9176018..9178676expressed protein
LOC_Os01g16230OsAffx.23270.1.S1_at11/111+9189051..9190241Protein kinase domain containing protein
LOC_Os01g16230OsAffx.23270.1.S1_x_at11/111+9189051..9190241Protein kinase domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0000338biological_processprotein deneddylation
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0009640biological_processphotomorphogenesis
GO:0010093biological_processspecification of floral organ identity
GO:0030163biological_processprotein catabolism
GO:0005634cellular_componentnucleus
GO:0008180cellular_componentsignalosome complex
GO:0008541cellular_componentproteasome regulatory particle, lid subcomplex (sensu Eukaryota)
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12343.1.S1_at--524--711Chr01:9165817..9165841 (25 bp)
ATGATGCTTGGCCAGGAACCGCGAC
LOC_Os01g16190
Os.12343.1.S1_at--580--2171Chr01:9165869..9165983 (25 bp)
ACAAACCATCTATCCAGGCTCTTAT
LOC_Os01g16190
Os.12343.1.S1_at--832--7571Chr01:9165988..9166012 (25 bp)
GGGCTGAACAGACACTACTACTCCA
LOC_Os01g16190
Os.12343.1.S1_at--70--5612Chr01:9165998..9166022 (25 bp)
GACACTACTACTCCATTGCAATCAA
LOC_Os01g16190
Os.12343.1.S1_at--841--8151Chr01:9166267..9166291 (25 bp)
GGAAATGCTGAACCTAGCCATCAAA
LOC_Os01g16190
Os.12343.1.S1_at--1158--3811Chr01:9166322..9166346 (25 bp)
CTGCCACCTGAGAAACTAGCGATTG
LOC_Os01g16190
Os.12343.1.S1_at--662--3711Chr01:9166337..9166361 (25 bp)
CTAGCGATTGCCAATGTGGGACGGC
LOC_Os01g16190
Os.12343.1.S1_at--1114--4791Chr01:9166438..9166462 (25 bp)
GCTCGACACGGTTGTGTTCTAGTCT
LOC_Os01g16190
Os.12343.1.S1_at--855--6591Chr01:9166472..9166496 (25 bp)
GTTGTGTCAACCCTATACAGACCCC
LOC_Os01g16190
Os.12343.1.S1_at--1002--6791Chr01:9166516..9166540 (25 bp)
GTTTATCGAAGCCTCTGCCGTAATT
LOC_Os01g16190
Os.12343.1.S1_at--235--9471Chr01:9166529..9166553 (25 bp)
TCTGCCGTAATTCTGTAACTTTTGG
LOC_Os01g16190
Target Sequence 
ATGATGCTTGGCCAGGAACCGCGACAGACAACATCAAATGTTGGGCATCTAAACAAACCATCTATCCAGGCTCTTATTCA
CGGGCTGAACAGACACTACTACTCCATTGCAATCAATTACCGCAAAAATGAACTGGAGGAGAAAATGTTGCTTAACTTAC
ACAAAAAGAAATGGACCGATGGATTGATTTTGAAGAGTTTTGACACTCATTCGAAAACCAATGAGCAGACTGTTCAGGAA
ATGCTGAACCTAGCCATCAAATATAACAAGGCAGTGCAGGAGGAGGATGAGCTGCCACCTGAGAAACTAGCGATTGCCAA
TGTGGGACGGCAGGATGCCAAGAAGCACTTGGAAGAGCATGTCTCAAATTTGATGTCGTCAAACATAGTTCAGACCCTAG
GAACCATGCTCGACACGGTTGTGTTCTAGTCTCCTTCTACTGTTGTGTCAACCCTATACAGACCCCCACCCAAATTATTA
TTTATGTTTATCGAAGCCTCTGCCGTAATTCTGTAACTTTTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12343.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis