Browse Element(s) Details


Os.22508.1.S1_at

Description gb:AK065023.1
DB_XREF= gi:32975041
TID=Os.22508.1
CNT=16
FEA=FLmRNA
TIER=FL+Stack
STK=9
UG=Os.22508 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unnamed protein product (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013001G08, full insert sequence.
FL= gb:AK065023.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1618011/11MT-A70 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g16170Os.15490.1.S1_at11/111+9130321..9137232PQ loop repeat family protein, expressed
LOC_Os01g16180Os.22508.1.S1_at11/111+9156567..9162489MT-A70 family protein, expressed
LOC_Os01g16190Os.12343.1.S1_at11/111+9163155..916666926S proteasome non-ATPase regulatory subunit 14, putative, expressed
LOC_Os01g16190Os.53022.1.S1_at1/111+9163155..916666926S proteasome non-ATPase regulatory subunit 14, putative, expressed
LOC_Os01g16200OsAffx.23267.1.S1_at11/111+9168430..9169701Serpin family protein
LOC_Os01g16210Os.46043.1.A1_s_at11/111+9169909..9172537Protein of unknown function, DUF614 containing protein, expressed
LOC_Os01g16210OsAffx.23268.1.S1_at11/111+9169909..9172537Protein of unknown function, DUF614 containing protein, expressed
LOC_Os01g16220Os.24775.1.A1_s_at11/111+9176018..9178676expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0008757molecular_functionS-adenosylmethionine-dependent methyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.22508.1.S1_at--630--6211Chr01:9162058..9162082 (25 bp)
GAGGCGGTGGACGAAATCCTCCTCC
LOC_Os01g16180
Os.22508.1.S1_at--632--4171Chr01:9162091..9162115 (25 bp)
CCCATCTAGTTGTGACGACACCTGA
LOC_Os01g16180
Os.22508.1.S1_at--2--2891Chr01:9162157..9162181 (25 bp)
AAGGGCAGCAGCCATTGGGCTCTAT
LOC_Os01g16180
Os.22508.1.S1_at--436--5111Chr01:9162198..9162222 (25 bp)
GCACTTACAAGCGAGCAACCTGGTA
LOC_Os01g16180
Os.22508.1.S1_at--1132--5131Chr01:9162212..9162236 (25 bp)
GCAACCTGGTAGAATATCCCCGAGA
LOC_Os01g16180
Os.22508.1.S1_at--871--511Chr01:9162227..9162251 (25 bp)
ATCCCCGAGATCAGTAGTTACCGTG
LOC_Os01g16180
Os.22508.1.S1_at--1131--6191Chr01:9162268..9162292 (25 bp)
GAGGCTAATTTTTTCGTACCTGTAG
LOC_Os01g16180
Os.22508.1.S1_at--828--1551Chr01:9162291..9162315 (25 bp)
AGCTTTATTACATCGCATTTCCTCT
LOC_Os01g16180
Os.22508.1.S1_at--476--5451Chr01:9162370..9162394 (25 bp)
GAACGCTTTGTTGTATGACTTGTAC
LOC_Os01g16180
Os.22508.1.S1_at--335--7031Chr01:9162391..9162415 (25 bp)
GTACAGTACTGGCTGCTCGAACAGG
LOC_Os01g16180
Os.22508.1.S1_at--661--211Chr01:9162434..9162458 (25 bp)
ATTTGGCAACGCTCCATTTCAAAGA
LOC_Os01g16180
Target Sequence 
GAGGCGGTGGACGAAATCCTCCTCCGGAGGCTCCCCATCTAGTTGTGACGACACCTGAGATTGAGGGCCTCAGGCCAAAG
TCACCCCCACAGAAGAACTAAGGGCAGCAGCCATTGGGCTCTATAGGTGTGGTTGCAAGTGCACTTACAAGCGAGCAACC
TGGTAGAATATCCCCGAGATCAGTAGTTACCGTGATTGGTTCAGACTTGAGAGGCTAATTTTTTCGTACCTGTAGCTTTA
TTACATCGCATTTCCTCTTATTGAAGTTTAGCCGAGGTGGTGCGGATGGATATTCAGTCTAACAGACNCAATGAACGCTT
TGTTGTATGACTTGTACAGTACTGGCTGCTCGAACAGGATGGTTCAGCTTCCAGAAATTTGGCAACGCTCCATTTCAAAG
A

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.22508.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis