Browse Element(s) Details


OsAffx.23268.1.S1_at

Description tigr:9629.m01614
TID=OsAffx.23268.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1621011/11Protein of unknown function, DUF614 containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g16180Os.22508.1.S1_at11/111+9156567..9162489MT-A70 family protein, expressed
LOC_Os01g16190Os.12343.1.S1_at11/111+9163155..916666926S proteasome non-ATPase regulatory subunit 14, putative, expressed
LOC_Os01g16190Os.53022.1.S1_at1/111+9163155..916666926S proteasome non-ATPase regulatory subunit 14, putative, expressed
LOC_Os01g16200OsAffx.23267.1.S1_at11/111+9168430..9169701Serpin family protein
LOC_Os01g16210Os.46043.1.A1_s_at11/111+9169909..9172537Protein of unknown function, DUF614 containing protein, expressed
LOC_Os01g16210OsAffx.23268.1.S1_at11/111+9169909..9172537Protein of unknown function, DUF614 containing protein, expressed
LOC_Os01g16220Os.24775.1.A1_s_at11/111+9176018..9178676expressed protein
LOC_Os01g16230OsAffx.23270.1.S1_at11/111+9189051..9190241Protein kinase domain containing protein
LOC_Os01g16230OsAffx.23270.1.S1_x_at11/111+9189051..9190241Protein kinase domain containing protein
LOC_Os01g16240Os.455.1.S1_at11/111+9192330..9195757Calmodulin, putative, expressed
LOC_Os01g16240Os.57504.1.S1_x_at1/111+9192330..9195757Calmodulin, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23268.1.S1_at--262--3071Chr01:9170258..9170282 (25 bp)
AATCTTTGGTTGTTGCTGCTTGCGA
LOC_Os01g16210
OsAffx.23268.1.S1_at--393--4771Chr01:9170244..9170268 (25 bp)
GCTGCTTGCGAGTGTTTGTTATATC
LOC_Os01g16210
OsAffx.23268.1.S1_at--1135--10551Chr01:9170219..9170243 (25 bp)
TTCTTTGATTGTGCTTCCACGGGTA
LOC_Os01g16210
OsAffx.23268.1.S1_at--314--9051Chr01:9170208..9170232 (25 bp)
TGCTTCCACGGGTACTACTACGAGG
LOC_Os01g16210
OsAffx.23268.1.S1_at--749--6991Chr01:9170197..9170221 (25 bp)
GTACTACTACGAGGCTGGTTCCGTA
LOC_Os01g16210
OsAffx.23268.1.S1_at--393--7891Chr01:9170181..9170205 (25 bp)
GGTTCCGTAGAGTTGTTGTAAAGAT
LOC_Os01g16210
OsAffx.23268.1.S1_at--954--3291Chr01:9170138..9170162 (25 bp)
CAAATCACAGTTTGCAGGTGTAGCT
LOC_Os01g16210
OsAffx.23268.1.S1_at--271--1051Chr01:9170123..9170147 (25 bp)
AGGTGTAGCTGTGTCATTGAACTGT
LOC_Os01g16210
OsAffx.23268.1.S1_at--126--3611Chr01:9170109..9170133 (25 bp)
CATTGAACTGTAGCACGATTGTTAC
LOC_Os01g16210
OsAffx.23268.1.S1_at--552--1431Chr01:9170037..9170061 (25 bp)
AGAACACACTTGTTGTCCATTGCCT
LOC_Os01g16210
OsAffx.23268.1.S1_at--957--71Chr01:9170019..9170043 (25 bp)
ATTGCCTCAGTTTCTTTCTCATATT
LOC_Os01g16210
Target Sequence 
AATCTTTGGTTGTTGCTGCTTGCGAGTGTTTGTTATATCTTCTTTGATTGTGCTTCCACGGGTACTACTACGAGGCTGGT
TCCGTAGAGTTGTTGTAAAGATGATTTTTCGACAAATGAGCAAATCACAGTTTGCAGGTGTAGCTGTGTCATTGAACTGT
AGCACGATTGTTACATGTAACATTTATCTTTTCACATATTGGAATATGATGGCAAAGGTAAAGAACACACTTGTTGTCCA
TTGCCTCAGTTTCTTTCTCATATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23268.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis