Browse Element(s) Details


Os.46043.1.A1_s_at

Description gb:AU082078
DB_XREF= gi:6552250
DB_XREF=AU082078
CLONE=C53435
TID=Os.46043.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.46043 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unnamed protein product (Gene), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1621011/11Protein of unknown function, DUF614 containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g16180Os.22508.1.S1_at11/111+9156567..9162489MT-A70 family protein, expressed
LOC_Os01g16190Os.12343.1.S1_at11/111+9163155..916666926S proteasome non-ATPase regulatory subunit 14, putative, expressed
LOC_Os01g16190Os.53022.1.S1_at1/111+9163155..916666926S proteasome non-ATPase regulatory subunit 14, putative, expressed
LOC_Os01g16200OsAffx.23267.1.S1_at11/111+9168430..9169701Serpin family protein
LOC_Os01g16210Os.46043.1.A1_s_at11/111+9169909..9172537Protein of unknown function, DUF614 containing protein, expressed
LOC_Os01g16210OsAffx.23268.1.S1_at11/111+9169909..9172537Protein of unknown function, DUF614 containing protein, expressed
LOC_Os01g16220Os.24775.1.A1_s_at11/111+9176018..9178676expressed protein
LOC_Os01g16230OsAffx.23270.1.S1_at11/111+9189051..9190241Protein kinase domain containing protein
LOC_Os01g16230OsAffx.23270.1.S1_x_at11/111+9189051..9190241Protein kinase domain containing protein
LOC_Os01g16240Os.455.1.S1_at11/111+9192330..9195757Calmodulin, putative, expressed
LOC_Os01g16240Os.57504.1.S1_x_at1/111+9192330..9195757Calmodulin, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46043.1.A1_s_at--896--291Chr01:9172033..9172057 (25 bp)
ATACTGAGGAGGATCGCGTTTCTGC
LOC_Os01g16210
Os.46043.1.A1_s_at--1055--4551Chr01:9171992..9172016 (25 bp)
GCGCGCCACAAGTTAACCCGGGATC
LOC_Os01g16210
Os.46043.1.A1_s_at--315--3971Chr01:9171974..9171998 (25 bp)
CGGGATCCTACACAATGGTCTTCAG
LOC_Os01g16210
Os.46043.1.A1_s_at--1096--811Chr01:9171960..9171984 (25 bp)
ATGGTCTTCAGGCATCTGTGCTTGT
LOC_Os01g16210
Os.46043.1.A1_s_at--8--6811Chr01:9171937..9171961 (25 bp)
GTTTTGATGATCCACAGAGCTGTAT
LOC_Os01g16210
Os.46043.1.A1_s_at--407--1371Chr01:9171922..9171946 (25 bp)
AGAGCTGTATGCTACTCTCTGACCT
LOC_Os01g16210
Os.46043.1.A1_s_at--419--9511Chr01:9171907..9171931 (25 bp)
TCTCTGACCTGTGACTCCTTGATTT
LOC_Os01g16210
Os.46043.1.A1_s_at--945--3611Chr01:9171368..9171392 (25 bp)
CTTGGGATCTGGAACTCTTGCTGGA
LOC_Os01g16210
Os.46043.1.A1_s_at--842--5471Chr01:9171357..9171381 (25 bp)
GAACTCTTGCTGGATCATGCACTAC
LOC_Os01g16210
Os.46043.1.A1_s_at--228--2231Chr01:9171307..9171331 (25 bp)
ACAAGTCTCTGCTGTGTGTTTACTG
LOC_Os01g16210
Os.46043.1.A1_s_at--424--7971Chr01:9171259..9171283 (25 bp)
GGATCTGCTGTTGCTTGTTATGCTT
LOC_Os01g16210
Target Sequence 
ATACTGAGGAGGATCGCGTTTCTGCGGAGGAGAATGATGCCGCGCGCCACAAGTTAACCCGGGATCCTACACAATGGTCT
TCAGGCATCTGTGCTTGTTTTGATGATCCACAGAGCTGTATGCTACTCTCTGACCTGTGACTCCTTGATTTCAGAAGGAA
AGATAAAAGGNTTTATTGGTGCAANTTGTCCTTGCTTCCTTTTTGGAAGGAATGCACAGTTCTTGGGATCTGGAACTCTT
GCTGGATCATGCACTACACATTGCATGCTTTGGGGCCTTCTCACAAGTCTCTGCTGTGTGTTTACTGGGGGCCTTGTATT
GGCAGTTCCAGGATCTGCTGTTGCTTGTTATGCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46043.1.A1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis