Browse Element(s) Details


Os.49712.1.S1_at

Description gb:AK107975.1
DB_XREF= gi:32993184
TID=Os.49712.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49712 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-135-D12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-135-D12, full insert sequence.
FL= gb:AK107975.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1625011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g16220Os.24775.1.A1_s_at11/111+9176018..9178676expressed protein
LOC_Os01g16230OsAffx.23270.1.S1_at11/111+9189051..9190241Protein kinase domain containing protein
LOC_Os01g16230OsAffx.23270.1.S1_x_at11/111+9189051..9190241Protein kinase domain containing protein
LOC_Os01g16240Os.455.1.S1_at11/111+9192330..9195757Calmodulin, putative, expressed
LOC_Os01g16240Os.57504.1.S1_x_at1/111+9192330..9195757Calmodulin, putative, expressed
LOC_Os01g16250Os.49712.1.S1_at11/111+9198156..9199174expressed protein
LOC_Os01g16260Os.10292.1.S1_at9/111+9201107..9208445transporter, putative, expressed
LOC_Os01g16260Os.57395.1.S1_at1/111+9201107..9208445transporter, putative, expressed
LOC_Os01g16270NANA1+9212477..9216283retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g16280NANA1+9217884..9218306hypothetical protein
LOC_Os01g16290Os.37563.1.S1_at11/111+9222015..9233827DNA gyrase, B subunit family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49712.1.S1_at--602--5911Chr01:9198589..9198613 (25 bp)
GAGCTCATCATGGAGGGACCTCGTT
LOC_Os01g16250
Os.49712.1.S1_at--648--8072Chr06:17361418..17361442 (25 bp)
GGACCTCGTTCCAATACAACCTAGG
NONE
Os.49712.1.S1_at--59--6551Chr01:9198632..9198656 (25 bp)
GATTTTTGCTTCTATATGCTCCATG
LOC_Os01g16250
Os.49712.1.S1_at--1140--252Chr06:17361459..17361483 (25 bp)
ATATGCTCCATGTGGACCCTAGATG
NONE
Os.49712.1.S1_at--817--1793Chr06:17361474..17361498 (25 bp)
ACCCTAGATGGTTGAATCGTCGTTG
NONE
Os.49712.1.S1_at--98--8693Chr06:17361522..17361546 (25 bp)
TGTGCCGCCGCCGATTTTGGGATCT
NONE
Os.49712.1.S1_at--1014--5813Chr06:17361774..17361798 (25 bp)
GACCCCACTTCATTAGTGTACAGTA
NONE
Os.49712.1.S1_at--888--5433Chr01:9199010..9199034 (25 bp)
GAACCTATGACATGTAGGCCCGGAT
LOC_Os01g16250
Os.49712.1.S1_at--1045--6914Chr06:17361837..17361861 (25 bp)
GTAGGCCCGGATGCTTAGAAATCTA
NONE
Os.49712.1.S1_at--654--8951Chr01:9199078..9199102 (25 bp)
TGACATGAGGGTCCCACCAAAGGTT
LOC_Os01g16250
Os.49712.1.S1_at--1105--7072Chr06:17361961..17361985 (25 bp)
GTCAATGACACAGCAGGATTTCCTT
NONE
Target Sequence 
GAGCTCATCATGGAGGGACCTCGTTCCAATACAACCTAGGCTAGATTTTTGCTTCTATATGCTCCATGTGGACCCTAGAT
GGTTGAATCGTCGTTGGTTNNNNTNNCNTTGGTCCTCATTGTGCCGCCGCCGATTTTGGGATCTCGGCGCCGTCGACCGC
CGTCGCGCCGCGCGCCGGANGATCGCCGCGCTTCGCCGCCGCCGGNGGNGGGTCTCTGGTGATGCGCCACCGCTCGCCCC
ANCGTGCGCCNANCCGTTCCGGCTCGGGCCGTCNCATCATCANNCGCCGCTCCTCTGCTCCGTCNCGAGCGGAAGGAAGA
AGACGACGGGGAGAAAGAAAAGAACGAGAGAGGGAGAGATTATGACATGTGGACCCCACTTCATTAGTGTACAGTAATCC
TCAAACTAATGATATTATTGTGAACCTATGACATGTAGGCCCGGATGCTTAGAAATCTAATTAAATTGGTTTTTAAGTAA
ATGTCTCAATGACATGAGGGTCCCACCAAAGGTTAAAGGTCCGGCTTGACCTCACCAACAGGGGGCCGGACCCACCTGTC
AATGACACAGCAGGATTTCCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49712.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis