Browse Element(s) Details


Os.10294.1.S1_at

Description gb:AK106130.1
DB_XREF= gi:32991339
TID=Os.10294.1
CNT=24
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.10294 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-207-F10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-207-F10, full insert sequence.
FL= gb:AK060122.1 gb:AK106130.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g5159011/11B2 protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g51550OsAffx.15198.1.S1_x_at11/115+29471513..29476608expressed protein
LOC_Os05g51550Os.54721.1.A1_at10/115+29471513..29476608expressed protein
LOC_Os05g51560Os.21837.1.S1_at11/115+29487871..29492718Casein kinase I, delta isoform, putative, expressed
LOC_Os05g51570Os.50784.1.S1_at11/115+29495779..29497300Vacuolar processing enzyme precursor, putative, expressed
LOC_Os05g51580OsAffx.27406.1.S1_at11/115+29500557..29501019hypothetical protein
LOC_Os05g51590Os.10294.1.S1_at11/115+29501485..29502876B2 protein, putative, expressed
LOC_Os05g51610Os.27828.1.S1_a_at11/115+29505383..29510567Vacuolar cation/proton exchanger 1b, putative, expressed
LOC_Os05g51620Os.19034.1.S1_at11/115+29512303..29518084expressed protein
LOC_Os05g51620Os.50278.2.S1_at1/115+29512303..29518084expressed protein
LOC_Os05g51630Os.10391.1.S1_a_at11/115+29524916..29533060early-responsive to dehydration protein, putative, expressed
LOC_Os05g51630Os.2259.1.S1_s_at1/115+29524916..29533060early-responsive to dehydration protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10294.1.S1_at--1114--10611Chr05:29502028..29502052 (25 bp)
TTCGAGGCCACCAGCTTCGGCGGAT
LOC_Os05g51590
Os.10294.1.S1_at--884--3651Chr05:29501815..29501839 (25 bp)
CTTCTTGACATCTTCGCCGAGAAGC
LOC_Os05g51590
Os.10294.1.S1_at--432--1751Chr05:29501768..29501792 (25 bp)
ACCTCTTCCATCTCAATTATACTAC
LOC_Os05g51590
Os.10294.1.S1_at--1026--311Chr05:29501750..29501774 (25 bp)
ATACTACTGTAACACACCATCCATC
LOC_Os05g51590
Os.10294.1.S1_at--929--571Chr05:29501728..29501752 (25 bp)
ATCCATCGCCCTTGTTAAATTTATA
LOC_Os05g51590
Os.10294.1.S1_at--678--7051Chr05:29501697..29501721 (25 bp)
GTAACTGGAGTACTACTTACAACTT
LOC_Os05g51590
Os.10294.1.S1_at--1051--2191Chr05:29501679..29501703 (25 bp)
ACAACTTACTTACTGCTATATGGAG
LOC_Os05g51590
Os.10294.1.S1_at--119--8311Chr05:29501550..29501570 (21 bp)
GGCTTTTTGTTCAAATGATTCATCA
LOC_Os05g51590
Os.10294.1.S1_at--233--6571Chr05:29501534..29501558 (25 bp)
GATTCATCAATGTTTGCTTTGGCTG
LOC_Os05g51590
Os.10294.1.S1_at--1086--10271Chr05:29501522..29501546 (25 bp)
TTTGCTTTGGCTGCTGATACTGATA
LOC_Os05g51590
Os.10294.1.S1_at--233--4751Chr05:29501510..29501534 (25 bp)
GCTGATACTGATACACAAACAGATT
LOC_Os05g51590
Target Sequence 
TTCGAGGCCACCAGCTTCGGCGGATCCAACATCGATCCCGGCGCTTGGGAGGACAGCAAGTGCCCCGGCGGCGAGTCCAG
GTTCCCAGCGCAGGTTCGGGTGGCCACGCGCAAGATCTGTGAGCCGCTGGAGGAGGACGCCTTCAGGCCCGTGCTGCACC
ACTACGACGGCCCCAAGTTCCGCCTCGAGCTCACCGTCGCCGAGGCCCTATCCCTTCTTGACATCTTCGCCGAGAAGCTC
TTCGCCTGACCATCCATCCTACCTCTTCCATCTCAATTATACTACTGTAACACACCATCCATCCATCGCCCTTGTTAAAT
TTATAGTACTAGTAACTGGAGTACTACTTACAACTTACTTACTGCTATATGGAGTAGCTAATAGAGGACGGAACAGAAGC
TTATTGCTGTTTCTTACGCATAGTACGCTCCTATGGCTGTAAGAACAAGTTACATAATATAGGCGAGGAAAAATAATATG
GCTTTTTGTTCAAATGATTCATCAATGTTTGCTTTGGCTGCTGATACTGATACACAAACAGATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10294.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis