Browse Element(s) Details


Os.10337.1.S1_x_at

Description gb:AK060905.1
DB_XREF= gi:32970923
TID=Os.10337.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.10337 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023136C13, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-035-F04, full insert sequence.
FL= gb:AK060905.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1258011/11Serine/threonine protein phosphatase PP2A-3 catalytic subunit, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g12520OsAffx.31445.1.S1_x_at2/112+6548906..6549253lipase class 3 family protein, putative
LOC_Os02g12520OsAffx.31445.1.S1_at2/112+6548906..6549253lipase class 3 family protein, putative
LOC_Os02g12530NANA2+6553794..6554309Cytochrome P450 71D11, putative
LOC_Os02g12540OsAffx.2585.1.S1_at11/112+6556026..6558023Cytochrome P450 family protein
LOC_Os02g12550Os.49199.1.S1_at11/112+6559488..6562188Cytochrome P450 family protein, expressed
LOC_Os02g12560NANA2+6566133..6566588expressed protein
LOC_Os02g12570Os.37484.1.S1_at10/112+6568159..6572501Pre-mRNA cleavage complex II protein Clp1 containing protein, expressed
LOC_Os02g12580Os.10337.2.S1_at11/112+6572766..6577608Serine/threonine protein phosphatase PP2A-3 catalytic subunit, putative, expressed
LOC_Os02g12580Os.10337.1.S1_x_at11/112+6572766..6577608Serine/threonine protein phosphatase PP2A-3 catalytic subunit, putative, expressed
LOC_Os02g12590OsAffx.12007.1.S1_at10/112+6578959..6579539hypothetical protein
LOC_Os02g12600OsAffx.12008.1.S1_x_at11/112+6582328..6587404NOL1/NOP2/sun family protein, expressed
LOC_Os02g12600Os.18147.1.S1_at10/112+6582328..6587404NOL1/NOP2/sun family protein, expressed
LOC_Os02g12610OsAffx.24212.1.S1_at11/112+6587538..6588065Hsp20/alpha crystallin family protein
LOC_Os02g12610OsAffx.24212.1.S1_x_at11/112+6587538..6588065Hsp20/alpha crystallin family protein
LOC_Os02g12620NANA2+6588391..6590160retrotransposon protein, putative, unclassified
LOC_Os02g12630OsAffx.10901.1.S1_at3/112+6591946..6594769retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g12640OsAffx.24213.1.S1_at11/112+6595265..6595657hypothetical protein
LOC_Os02g12650Os.11236.1.S1_at11/112+6599222..6606524Peptidase family M1 containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006470biological_processprotein amino acid dephosphorylation
GO:0009926biological_processauxin polar transport
GO:0000159cellular_componentprotein phosphatase type 2A complex
GO:0005634cellular_componentnucleus
GO:0005730cellular_componentnucleolus
GO:0005737cellular_componentcytoplasm
GO:0000158molecular_functionprotein phosphatase type 2A activity
GO:0004722molecular_functionprotein serine/threonine phosphatase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10337.1.S1_x_at--488--351Chr02:6575460..6575484 (25 bp)
ATAACATCCGTGCTCTTGATCGTAT
LOC_Os02g12580
Os.10337.1.S1_x_at--980--2291Chr02:6574355..6574379 (25 bp)
AAATGGTCTATCTCTCATCTCAAGG
LOC_Os02g12580
Os.10337.1.S1_x_at--526--10811Chr02:6573424..6573448 (25 bp)
TTGTGACGGTCTTCAGTGCACCAAA
LOC_Os02g12580
Os.10337.1.S1_x_at--837--1431Chr02:6573340..6573364 (25 bp)
AGAACTTCCTCCAATTTGATCCAGC
LOC_Os02g12580
Os.10337.1.S1_x_at--696--8851Chr02:6573324..6573348 (25 bp)
TGATCCAGCTCCTCGGCAAATTGAA
LOC_Os02g12580
Os.10337.1.S1_x_at--583--5151Chr02:6573286..6573310 (25 bp)
GCAAGACTCCCGACTACTTTTTGTA
LOC_Os02g12580
Os.10337.1.S1_x_at--629--10491Chr02:6573242..6573266 (25 bp)
TTAACTCACCTGTGTTGATGCTCCT
LOC_Os02g12580
Os.10337.1.S1_x_at--420--7811Chr02:6573200..6573224 (25 bp)
GGTCTGTAGATCTTCTGTCCTTAGA
LOC_Os02g12580
Os.10337.1.S1_x_at--1140--3831Chr02:6573186..6573210 (25 bp)
CTGTCCTTAGATACGGGTTCCACGA
LOC_Os02g12580
Os.10337.1.S1_x_at--1008--8332Chr06:10840034..10840055 (22 bp)
GGCTGTATGTCTCTCAATTCTTTTG
NONE
Os.10337.1.S1_x_at--532--6051Chr02:6573128..6573152 (25 bp)
GAGATTTTGTTGCTGCTTCTCAACC
LOC_Os02g12580
Target Sequence 
ATAACATCCGTGCTCTTGATCGTATACAAGAGGTTCCTCATGAAGGACCCATGTGTGATCTTTTGTGGTCTGACCCAGAT
GACAGATGCGGGTGGGGAATTTCACCGAGAGGAGCAGGTTATACATTTGGGCAAGATATCGCTCAACAGTTTAACCATAC
AAATGGTCTATCTCTCATCTCAAGGGCACATCAACTTGTAATGGAAGGATTTAATTGGTGTCAGGACAAGAATGTTGTGA
CGGTCTTCAGTGCACCAAACTACTGTTATCGCTGTGGTAACATGGCTGCAATTCTTGAGATTGGCGAAAACATGGATCAG
AACTTCCTCCAATTTGATCCAGCTCCTCGGCAAATTGAACCAGACACAACACGCAAGACTCCCGACTACTTTTTGTAATT
TGTGGTGTTGACAATTTTAACTCACCTGTGTTGATGCTCCTCTCCTCCGCGGTGTCGGGGTCTGTAGATCTTCTGTCCTT
AGATACGGGTTCCACGAGCCCGGCTGTATGTCTCTCAATTCTTTTGTTTGGAGATTTTGTTGCTGCTTCTCAACC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10337.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis