Browse Element(s) Details


Os.10360.1.S1_at

Description gb:AK099925.1
DB_XREF= gi:32985134
TID=Os.10360.1
CNT=56
FEA=FLmRNA
TIER=FL+Stack
STK=25
UG=Os.10360 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cytochrome P450-like protein (OSJNBb0005J14.27), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013116M22, full insert sequence.
FL= gb:AK099925.1 gb:AK069358.1 gb:AK104799.1 gb:AK105884.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3811011/11Cytochrome P450 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g38070OsAffx.7960.1.S1_at11/1110+20058201..20059181expressed protein
LOC_Os10g38080Os.6363.1.S1_at11/1110+20059961..20062501Subtilisin N-terminal Region family protein, expressed
LOC_Os10g38090Os.39214.1.S1_at11/1110+20065112..20069616Cytochrome P450 family protein, expressed
LOC_Os10g38094NANA10+20070971..20071742hypothetical protein
LOC_Os10g38100OsAffx.21993.2.S1_at11/1110+20077727..20078317hypothetical protein
LOC_Os10g38100OsAffx.21993.2.S1_x_at11/1110+20077727..20078317hypothetical protein
LOC_Os10g38110Os.10360.1.S1_at11/1110+20082346..20086498Cytochrome P450 family protein, expressed
LOC_Os10g38120NANA10+20097289..20100849Cytochrome P450 family protein
LOC_Os10g38130OsAffx.30710.1.S1_at11/1110+20101530..20102038hypothetical protein
LOC_Os10g38140Os.13014.1.S1_a_at11/1110+20102322..20103581Glutathione S-transferase, N-terminal domain containing protein, expressed
LOC_Os10g38150Os.36568.1.S1_x_at11/1110+20104897..20105966glutathione S-transferase parC, putative, expressed
LOC_Os10g38150Os.46637.1.S1_at11/1110+20104897..20105966glutathione S-transferase parC, putative, expressed
LOC_Os10g38160NANA10+20108236..20109794glutathione S-transferase GSTU6, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0019825molecular_functionoxygen binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10360.1.S1_at--1032--9691Chr10:20082931..20082951 (21 bp)
TCAAATTTACAGCTTTCCAGGCCGG
LOC_Os10g38110
Os.10360.1.S1_at--779--2911Chr10:20082691..20082715 (25 bp)
AAGGAGATCATCAGCTACCGGACCA
LOC_Os10g38110
Os.10360.1.S1_at--20--731Chr10:20082667..20082691 (25 bp)
ATGATTACACTCTCCGTCGATCAGG
LOC_Os10g38110
Os.10360.1.S1_at--878--6291Chr10:20082618..20082642 (25 bp)
GATGAGGGCACACACTACAGTCTGG
LOC_Os10g38110
Os.10360.1.S1_at--98--9871Chr10:20082603..20082627 (25 bp)
TACAGTCTGGGCACGCACAGCAGCT
LOC_Os10g38110
Os.10360.1.S1_at--527--8331Chr10:20082578..20082602 (25 bp)
GGCTCCTGTACTCATGCAAGTGATA
LOC_Os10g38110
Os.10360.1.S1_at--427--2871Chr10:20082561..20082585 (25 bp)
AAGTGATAGCTCCTTGTGCATACCA
LOC_Os10g38110
Os.10360.1.S1_at--131--5451Chr10:20082532..20082556 (25 bp)
GAACGAGATCTGCAAACCTTAATTA
LOC_Os10g38110
Os.10360.1.S1_at--751--8711Chr10:20082507..20082531 (25 bp)
TGTCTGATCGTGAATAACCCGCATT
LOC_Os10g38110
Os.10360.1.S1_at--382--1811Chr10:20082491..20082515 (25 bp)
ACCCGCATTGCACCCTAGAATAATA
LOC_Os10g38110
Os.10360.1.S1_at--142--1971Chr10:20082455..20082479 (25 bp)
ACTGCAGTCAGGGTCAGAGTAACTT
LOC_Os10g38110
Target Sequence 
TCAAATTTACAGCTTTCCAGGCCGGCCCAAGAATCTGCCTCGGGAAGGATTTCGCGTACAGGCAGATGAAGATCTTCGCG
GCCGTGCTGCTCCGTTTCTTCGTGCTCAAGCTGCGGGACGAGAAGGAGATCATCAGCTACCGGACCATGATTACACTCTC
CGTCGATCAGGGTCTCCATCTGACGGCTATGGCGAGATGAGGGCACACACTACAGTCTGGGCACGCACAGCAGCTGGCTC
CTGTACTCATGCAAGTGATAGCTCCTTGTGCATACCAAAACGAACGAGATCTGCAAACCTTAATTATGTCTGATCGTGAA
TAACCCGCATTGCACCCTAGAATAATAAGTGCATCTGAACTGCAGTCAGGGTCAGAGTAACTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10360.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis