Browse Element(s) Details


Os.10385.1.S1_at

Description gb:AK103511.1
DB_XREF= gi:32988720
TID=Os.10385.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.10385 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033131F13, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033131F13, full insert sequence.
FL= gb:AK103511.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5527011/11TIP41-like family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g55230Os.31504.1.S1_at11/113+31375286..31376903Cytochrome P450 81E1, putative, expressed
LOC_Os03g55240Os.11193.1.S1_at10/113+31379697..31385021Cytochrome P450 family protein, expressed
LOC_Os03g55240Os.51328.1.S1_at2/113+31379697..31385021Cytochrome P450 family protein, expressed
LOC_Os03g55250Os.27225.1.S1_at11/113+31387566..31388756Cytochrome P450 81E1, putative, expressed
LOC_Os03g55260Os.10430.1.S1_at11/113+31392494..31394611Cytochrome P450 family protein, expressed
LOC_Os03g55270Os.10385.1.S1_at11/113+31394612..31397826TIP41-like family protein, expressed
LOC_Os03g55280Os.10389.1.S1_at11/113+31399385..31402519aspartate-semialdehyde dehydrogenase family protein, expressed
LOC_Os03g55290Os.4780.1.S1_at5/113+31404120..31404506Gibberellin-regulated protein 2 precursor, putative, expressed
LOC_Os03g55300OsAffx.3612.1.S1_at11/113+31407632..31408360expressed protein
LOC_Os03g55310NANA3+31408868..31410664SWIB complex BAF60b domain-containing protein, putative, expressed
LOC_Os03g55320Os.38297.1.S1_a_at11/113+31411064..31413815protein phosphatase 2C family protein, putative, expressed
LOC_Os03g55330Os.51893.1.S1_at11/113+31415190..31419011ankyrin repeat family protein, putative, expressed
LOC_Os03g55340Os.52369.1.S1_at11/113+31419097..31422237pentatricopeptide, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10385.1.S1_at--453--9771Chr03:31395717..31395741 (25 bp)
TAATGGCATTTCATTCCTCACTGTG
LOC_Os03g55270
Os.10385.1.S1_at--1069--4211Chr03:31395149..31395173 (25 bp)
CCGGGTGTATTGCTCTTTTGGTAGT
LOC_Os03g55270
Os.10385.1.S1_at--1101--10051Chr03:31394965..31395092 (25 bp)
TAGTCTGTCTGCGAAGGGATACCCT
LOC_Os03g55270
Os.10385.1.S1_at--644--5711Chr03:31394937..31394961 (25 bp)
GACTCTGCAGCATATGGAGACCCGA
LOC_Os03g55270
Os.10385.1.S1_at--729--8051Chr03:31394922..31394946 (25 bp)
GGAGACCCGAATCTTATTGCTCATA
LOC_Os03g55270
Os.10385.1.S1_at--516--71Chr03:31394907..31394931 (25 bp)
ATTGCTCATAAGCTTCCAGTTGTGA
LOC_Os03g55270
Os.10385.1.S1_at--106--3611Chr03:31394807..31394831 (25 bp)
CATTGACTGTTGGACGGTGTTCTCT
LOC_Os03g55270
Os.10385.1.S1_at--1049--8791Chr03:31394790..31394814 (25 bp)
TGTTCTCTTTCTGCTTATCATGTGC
LOC_Os03g55270
Os.10385.1.S1_at--448--5091Chr03:31394751..31394775 (25 bp)
GCACGTTCCTGTAGCTGGCAATAGT
LOC_Os03g55270
Os.10385.1.S1_at--486--7591Chr03:31394690..31394714 (25 bp)
GGGCTTATCAGCTTTTAACTCTCAT
LOC_Os03g55270
Os.10385.1.S1_at--971--7571Chr03:31394634..31394658 (25 bp)
GGGCTTTGCATGTTTCTGATACAGA
LOC_Os03g55270
Target Sequence 
TAATGGCATTTCATTCCTCACTGTGCGAGTGAGGGTGATGCCAACTGGTTGGTTCCTGCTCTTGCGTTTTTGGCTTAGGG
TTGATGGTGTACTTATGAGATTGAGGGATACCCGGGTGTATTGCTCTTTTGGTAGTGACGAAGCAAAACCCATTGTACTG
CGTGAATGCTGCTGGAGGGAAGCAACATTTGCTAGTCTGTCTGCGAAGGGATACCCTTCCGACTCTGCAGCATATGGAGA
CCCGAATCTTATTGCTCATAAGCTTCCAGTTGTGATGCAGAAGATCCAAAAGCTGAAATTACCCAATTAACCCGACAACC
CATCTCGTGTACATCAGCGTTTTTTTTTTCCATTGACTGTTGGACGGTGTTCTCTTTCTGCTTATCATGTGCTGTGGTCT
GTGGATGCACGTTCCTGTAGCTGGCAATAGTATAAAAATTCTTGTGGTAAAGGCTATTTGTCTACTGGGGCTTATCAGCT
TTTAACTCTCATTCTCGCCATGCTTGAATAAGACGCTTCAACGGGGCTTTGCATGTTTCTGATACAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10385.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis