Browse Element(s) Details


Os.10411.1.S1_at

Description gb:AY077725.1
DB_XREF= gi:18652813
GEN=ZFP
TID=Os.10411.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.10411 (NCBI UniGene Cluster)
DEF=Oryza sativa C2H2 zinc finger protein (ZFP) mRNA, complete cds.
PROD=C2H2 zinc finger protein
FL= gb:AK108227.1 gb:AY077725.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6219011/11Zinc finger, C2H2 type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g62150Os.24942.1.S1_at11/111+36308451..36311043Clathrin adaptor complex small chain family protein, expressed
LOC_Os01g62150OsAffx.23889.1.S1_s_at10/111+36308451..36311043Clathrin adaptor complex small chain family protein, expressed
LOC_Os01g62160Os.33927.1.S1_at11/111+36311107..36314405expressed protein
LOC_Os01g62170OsAffx.21761.1.S1_x_at11/111+36320830..36322782hypothetical protein
LOC_Os01g62170OsAffx.23890.4.S1_x_at10/111+36320830..36322782hypothetical protein
LOC_Os01g62170OsAffx.21761.1.S1_at9/111+36320830..36322782hypothetical protein
LOC_Os01g62170OsAffx.23890.2.S1_x_at6/111+36320830..36322782hypothetical protein
LOC_Os01g62170OsAffx.23890.2.S1_at5/111+36320830..36322782hypothetical protein
LOC_Os01g62180NANA1+36322908..36323828hypothetical protein
LOC_Os01g62190Os.10411.1.S1_at11/111+36328091..36328950Zinc finger, C2H2 type family protein, expressed
LOC_Os01g62200Os.38316.1.S1_at11/111+36329408..36331950expressed protein
LOC_Os01g62200Os.38316.1.S1_s_at10/111+36329408..36331950expressed protein
LOC_Os01g62200Os.27407.1.A1_at6/111+36329408..36331950expressed protein
LOC_Os01g62210Os.47966.1.S1_at10/111+36334251..36336745ribosomal protein L17 containing protein, expressed
LOC_Os01g62210OsAffx.21760.1.S1_at1/111+36334251..36336745ribosomal protein L17 containing protein, expressed
LOC_Os01g62220OsAffx.11696.1.S1_at11/111+36338499..36339869pentatricopeptide, putative
LOC_Os01g62230Os.19784.1.S1_at10/111+36340890..36341546Histone H2B, putative, expressed
LOC_Os01g62244Os.12603.1.S1_at11/111+36344054..36350317Ubiquitin-conjugating enzyme E2 7, putative, expressed
LOC_Os01g62244Os.51168.1.S1_at1/111+36344054..36350317Ubiquitin-conjugating enzyme E2 7, putative, expressed
LOC_Os01g62244Os.52300.1.S1_at1/111+36344054..36350317Ubiquitin-conjugating enzyme E2 7, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006979biological_processresponse to oxidative stress
GO:0009408biological_processresponse to heat
GO:0009409biological_processresponse to cold
GO:0009416biological_processresponse to light stimulus
GO:0009611biological_processresponse to wounding
GO:0009631biological_processcold acclimation
GO:0009643biological_processphotosynthetic acclimation
GO:0010200biological_processresponse to chitin
GO:0042538biological_processhyperosmotic salinity response
GO:0045449biological_processregulation of transcription
GO:0003676molecular_functionnucleic acid binding
GO:0003700molecular_functiontranscription factor activity
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10411.1.S1_at--635--1931Chr01:36328627..36328651 (25 bp)
ACGGCTCGGAGCCTGAGTTACTTAA
LOC_Os01g62190
Os.10411.1.S1_at--348--4471Chr01:36328637..36328661 (25 bp)
GCCTGAGTTACTTAACCTTCTTGTA
LOC_Os01g62190
Os.10411.1.S1_at--428--7351Chr01:36328686..36328710 (25 bp)
GTGAATTGAATTGGCGTCTGTACAT
LOC_Os01g62190
Os.10411.1.S1_at--183--31Chr01:36328695..36328719 (25 bp)
ATTGGCGTCTGTACATAGATATGGT
LOC_Os01g62190
Os.10411.1.S1_at--30--8011Chr01:36328720..36328744 (25 bp)
GGATGGATTCTTTACCAAATTTGAT
LOC_Os01g62190
Os.10411.1.S1_at--814--2531Chr01:36328755..36328779 (25 bp)
AACTAAATTTTGGAGCGTGATGATC
LOC_Os01g62190
Os.10411.1.S1_at--990--4651Chr01:36328769..36328793 (25 bp)
GCGTGATGATCATAGCATGTAAGTT
LOC_Os01g62190
Os.10411.1.S1_at--547--9551Chr01:36328827..36328851 (25 bp)
TCTATTCATTTGTTCTCTTCTGTAC
LOC_Os01g62190
Os.10411.1.S1_at--167--10431Chr01:36328875..36328899 (25 bp)
TTAGTTGGTCGGTTGTGGTTGATTC
LOC_Os01g62190
Os.10411.1.S1_at--440--7191Chr01:36328882..36328906 (25 bp)
GTCGGTTGTGGTTGATTCTTTGTAA
LOC_Os01g62190
Os.10411.1.S1_at--733--2251Chr01:36328926..36328950 (25 bp)
AAATATACTGACAGCTTATTGTTTC
LOC_Os01g62190
Target Sequence 
ACGGCTCGGAGCCTGAGTTACTTAACCTTCTTGTATAAGTTGCATCGATAGATATACATGTGAATTGAATTGGCGTCTGT
ACATAGATATGGTGGATGGATTCTTTACCAAATTTGATCGAAAAAAAGAACTAAATTTTGGAGCGTGATGATCATAGCAT
GTAAGTTGTAACAAATGATTGTTAACTGTAAGATAGGAATTCTATTCATTTGTTCTCTTCTGTACAAAATTACAAATAGG
TTGATTAATTAGTTGGTCGGTTGTGGTTGATTCTTTGTAAAATACCAATTTACTAGTATAAATATACTGACAGCTTATTG
TTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10411.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis