Browse Element(s) Details


Os.10430.1.S1_at

Description gb:AK100633.1
DB_XREF= gi:32985842
TID=Os.10430.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.10430 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023109P12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023109P12, full insert sequence.
FL= gb:AK100633.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5526011/11Cytochrome P450 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g55230Os.31504.1.S1_at11/113+31375286..31376903Cytochrome P450 81E1, putative, expressed
LOC_Os03g55240Os.11193.1.S1_at10/113+31379697..31385021Cytochrome P450 family protein, expressed
LOC_Os03g55240Os.51328.1.S1_at2/113+31379697..31385021Cytochrome P450 family protein, expressed
LOC_Os03g55250Os.27225.1.S1_at11/113+31387566..31388756Cytochrome P450 81E1, putative, expressed
LOC_Os03g55260Os.10430.1.S1_at11/113+31392494..31394611Cytochrome P450 family protein, expressed
LOC_Os03g55270Os.10385.1.S1_at11/113+31394612..31397826TIP41-like family protein, expressed
LOC_Os03g55280Os.10389.1.S1_at11/113+31399385..31402519aspartate-semialdehyde dehydrogenase family protein, expressed
LOC_Os03g55290Os.4780.1.S1_at5/113+31404120..31404506Gibberellin-regulated protein 2 precursor, putative, expressed
LOC_Os03g55300OsAffx.3612.1.S1_at11/113+31407632..31408360expressed protein
LOC_Os03g55310NANA3+31408868..31410664SWIB complex BAF60b domain-containing protein, putative, expressed
LOC_Os03g55320Os.38297.1.S1_a_at11/113+31411064..31413815protein phosphatase 2C family protein, putative, expressed
LOC_Os03g55330Os.51893.1.S1_at11/113+31415190..31419011ankyrin repeat family protein, putative, expressed
LOC_Os03g55340Os.52369.1.S1_at11/113+31419097..31422237pentatricopeptide, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0019825molecular_functionoxygen binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10430.1.S1_at--305--6031Chr03:31394054..31394078 (25 bp)
GAGATGCTGGCATTGCAGACAATTG
LOC_Os03g55260
Os.10430.1.S1_at--1028--6331Chr03:31394129..31394153 (25 bp)
GATGCTATGGTTGATATGACACAGA
LOC_Os03g55260
Os.10430.1.S1_at--744--5951Chr03:31394152..31394176 (25 bp)
GAGCAATGGACTGACTAGCCTCAAG
LOC_Os03g55260
Os.10430.1.S1_at--712--9971Chr03:31394167..31394191 (25 bp)
TAGCCTCAAGGTCATTCCGTTGGAG
LOC_Os03g55260
Os.10430.1.S1_at--10--2711Chr03:31394211..31394235 (25 bp)
AAGCTATGTGCGATGTTCTTCGGAA
LOC_Os03g55260
Os.10430.1.S1_at--88--791Chr03:31394240..31394264 (25 bp)
ATGTGAAGCCATACACGGCTGTGTA
LOC_Os03g55260
Os.10430.1.S1_at--214--291Chr03:31394417..31394441 (25 bp)
ATAGTCGTGCAGTGTTCGTCAAACA
LOC_Os03g55260
Os.10430.1.S1_at--627--5391Chr03:31394477..31394501 (25 bp)
GAAGCTATAACCACTATCCGAAAAT
LOC_Os03g55260
Os.10430.1.S1_at--777--3111Chr03:31394499..31394523 (25 bp)
AATATACCTATCTTGCTGGTTCAAA
LOC_Os03g55260
Os.10430.1.S1_at--14--7051Chr03:31394552..31394576 (25 bp)
GTAAATTTCCACTGCATGTTCTCGA
LOC_Os03g55260
Os.10430.1.S1_at--1032--10371Chr03:31394582..31394606 (25 bp)
TTTTCATGAGATCGAGCTGGCTTTC
LOC_Os03g55260
Target Sequence 
GAGATGCTGGCATTGCAGACAATTGGGTTAGTTTTGGGGACTATGATCCAGTGCTTTGATTGGGGCAGAGTTGATGATGC
TATGGTTGATATGACACAGAGCAATGGACTGACTAGCCTCAAGGTCATTCCGTTGGAGGCCATGTGCAAACCACGAGAAG
CTATGTGCGATGTTCTTCGGAAATTCATGTGAAGCCATACACGGCTGTGTAGCAGGGAATAAAGTTCTGGTGACTATATA
CTCTNNNNNCAAACAAAACCTAATNTTGTANCCAANTTTATCTCTAGGATNANGATATTTATTGGGACAAAGGGAGTGGG
ANAGACAGAAGCTATACTTAGTNATTTAAACAGAAGGGNATAANATAGTCGTGCAGTGTTCGTCAAACAATGTACACATC
ATTTTAGCACAAAAGCTGCNCGTNGAAGCTATAACCACTATCCGAAAATATACCTATCTTGCTGGTTCAAATTAGTAGCT
ATATTTTANATCCGAGGGAGTAAATTTCCACTGCATGTTCTCGAATATATTTTCATGAGATCGAGCTGGCTTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10430.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis