Browse Element(s) Details


Os.10468.1.S1_at

Description gb:AK063718.1
DB_XREF= gi:32973736
TID=Os.10468.1
CNT=14
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.10468 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-120-C09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-120-C09, full insert sequence.
FL= gb:AK063718.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5147011/11expressed protein
LOC_Os08g104002/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g51440OsAffx.3575.1.S1_at11/113+29376948..29380996Leucine Rich Repeat family protein, expressed
LOC_Os03g51450NANA3+29383180..29383539hypothetical protein
LOC_Os03g51470Os.10468.1.S1_at11/113+29401687..29404169expressed protein
LOC_Os03g51479Os.55664.1.S1_at11/113+29405538..29411288Maf-like protein, expressed
LOC_Os03g51479Os.31771.2.S1_at11/113+29405538..29411288Maf-like protein, expressed
LOC_Os03g51479Os.31771.2.S1_x_at11/113+29405538..29411288Maf-like protein, expressed
LOC_Os03g51479Os.31771.1.S1_at11/113+29405538..29411288Maf-like protein, expressed
LOC_Os03g51479OsAffx.5618.1.S1_at1/113+29405538..29411288Maf-like protein, expressed
LOC_Os03g51479OsAffx.5618.1.S1_x_at1/113+29405538..29411288Maf-like protein, expressed
LOC_Os03g51490Os.31771.3.S1_at10/113+29407570..29409263expressed protein
LOC_Os03g51510OsAffx.3576.1.S1_s_at11/113+29413483..29416252Mitochondrial 60S ribosomal protein L6, putative, expressed
LOC_Os03g51510Os.7389.1.S1_at11/113+29413483..29416252Mitochondrial 60S ribosomal protein L6, putative, expressed
LOC_Os03g51520Os.25317.1.S1_at11/113+29418244..29428601Fip1 motif family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10468.1.S1_at--496--1211Chr03:29402104..29402128 (25 bp)
AGTTCGGTGACAGTCGAGTCTCAGT
LOC_Os03g51470
Os.10468.1.S1_at--727--7571Chr03:29402073..29402097 (25 bp)
GGGCTAGCTTCTGATCAGTACCAAC
LOC_Os03g51470
Os.10468.1.S1_at--373--3011Chr03:29402030..29402054 (25 bp)
AATCCTCTTAGGTGCTCAACGGTGG
LOC_Os03g51470
Os.10468.1.S1_at--809--32Chr08:6097745..6097768 (24 bp)
ATTGTGAGGTCTTATCGATCAGCGA
LOC_Os08g10400
Os.10468.1.S1_at--89--10271Chr03:29401965..29401989 (25 bp)
TTTGCTATGTCATCTTGTTCGTAGA
LOC_Os03g51470
Os.10468.1.S1_at--26--2111Chr03:29401917..29401941 (25 bp)
ACATGGTTGGCTGAGTGGTTACTAC
LOC_Os03g51470
Os.10468.1.S1_at--174--7891Chr03:29401901..29401925 (25 bp)
GGTTACTACTGCTGTGATCTCCGGA
LOC_Os03g51470
Os.10468.1.S1_at--837--6412Chr08:6097633..6097657 (25 bp)
GATCTCCGGATGTTTCTACCTGAAA
LOC_Os08g10400
Os.10468.1.S1_at--721--5431Chr03:29401853..29401877 (25 bp)
GAACCTTGAATCTGCTTGGTAGCAT
LOC_Os03g51470
Os.10468.1.S1_at--1105--9031Chr03:29401811..29401835 (25 bp)
TGCAGCTGGTTAAATTCGTGCCGCT
LOC_Os03g51470
Os.10468.1.S1_at--265--4011Chr03:29401795..29401819 (25 bp)
CGTGCCGCTGCTATTCTGATATAGA
LOC_Os03g51470
Target Sequence 
AGTTCGGTGACAGTCGAGTCTCAGTGAGGGGGGGCTAGCTTCTGATCAGTACCAACTTTGATGAGACAAGTGTAAATCCT
CTTAGGTGCTCAACGGTGGAACTTGAATTGTGAGGTCTTATCGATCAGCGAGTAGTTTTTTTGCTATGTCATCTTGTTCG
TAGATTCTAGTAGGAAGAGTAGTTTGGACATGGTTGGCTGAGTGGTTACTACTGCTGTGATCTCCGGATGTTTCTACCTG
AAAAAATATGTGAACCTTGAATCTGCTTGGTAGCATCTATGATCAATCTGCAGTGCAGCTGGTTAAATTCGTGCCGCTGC
TATTCTGATATAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10468.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis