Browse Element(s) Details


Os.10498.1.S1_at

Description gb:AK065202.1
DB_XREF= gi:32975220
TID=Os.10498.1
CNT=12
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.10498 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unknown protein (OSJNBa0051D19.1), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013002F01, full insert sequence.
FL= gb:AK065202.1 gb:AK121914.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3510011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g35040Os.46331.1.S1_s_at11/1110+18367714..18370483Protein kinase domain containing protein, expressed
LOC_Os10g35050Os.2544.1.S1_s_at11/1110+18371554..18372931Aquaporin TIP3.1, putative, expressed
LOC_Os10g35050OsAffx.9909.2.S1_x_at2/1110+18371554..18372931Aquaporin TIP3.1, putative, expressed
LOC_Os10g35060Os.2540.1.S1_at11/1110+18373563..18376629Ser/Thr protein phosphatase family protein, expressed
LOC_Os10g35070Os.17491.1.S1_at5/1110+18378181..18381958Alpha-galactosidase precursor, putative, expressed
LOC_Os10g35080OsAffx.18523.1.S1_at11/1110+18381976..18385830hypothetical protein
LOC_Os10g35090Os.46382.2.S1_x_at11/1110+18388465..18392252Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os10g35090Os.46382.1.S1_at11/1110+18388465..18392252Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os10g35090Os.46382.2.S2_x_at11/1110+18388465..18392252Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os10g35090Os.46382.4.S1_x_at2/1110+18388465..18392252Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os10g35100Os.10498.1.S1_at11/1110+18394352..18395856expressed protein
LOC_Os10g35110Os.7805.1.S1_a_at11/1110+18403684..18411717Alpha-galactosidase precursor, putative, expressed
LOC_Os10g35110OsAffx.6874.1.S1_at1/1110+18403684..18411717Alpha-galactosidase precursor, putative, expressed
LOC_Os10g35120OsAffx.30679.2.S1_x_at11/1110+18415958..18416449hypothetical protein
LOC_Os10g35130Os.5140.1.S1_at11/1110+18417659..18420680expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10498.1.S1_at--1077--991Chr10:18394913..18394937 (25 bp)
AGGATATCGTTGGTCTTTGCATTGG
LOC_Os10g35100
Os.10498.1.S1_at--855--6951Chr10:18394873..18394897 (25 bp)
GTCCTAGGTTTCGACGAGGCCTTTG
LOC_Os10g35100
Os.10498.1.S1_at--320--891Chr10:18394857..18394881 (25 bp)
AGGCCTTTGCTCTTCTAGTTTCACT
LOC_Os10g35100
Os.10498.1.S1_at--44--10051Chr10:18394842..18394866 (25 bp)
TAGTTTCACTTTTTGTTTCGCGGCG
LOC_Os10g35100
Os.10498.1.S1_at--134--5851Chr10:18394814..18394838 (25 bp)
GACCTTTGCTCCTTGTTTGATTTTG
LOC_Os10g35100
Os.10498.1.S1_at--919--8071Chr10:18394777..18394801 (25 bp)
GGAGCTGCTTCGTTGTGGTAATGAA
LOC_Os10g35100
Os.10498.1.S1_at--277--5631Chr10:18394739..18394763 (25 bp)
GACACACTACAGTTTCTTTCTAGGG
LOC_Os10g35100
Os.10498.1.S1_at--244--731Chr10:18394650..18394674 (25 bp)
ATGTTGAGGCCGCTTGATCATTATG
LOC_Os10g35100
Os.10498.1.S1_at--975--3412Chr09:16316240..16316260 (21 bp)
CAGATTGCAAAGTCGGAACCTCCTA
NONE
Os.10498.1.S1_at--901--5431Chr10:18394533..18394557 (25 bp)
GAACCTCCTATATTGCTCTTGGTCA
LOC_Os10g35100
Os.10498.1.S1_at--1088--10231Chr10:18394506..18394530 (25 bp)
TTTGGTATCGACACCCTATGTTGGG
LOC_Os10g35100
Target Sequence 
AGGATATCGTTGGTCTTTGCATTGGCTTCGAANGCTTTTTAGTCCTAGGTTTCGACGAGGCCTTTGCTCTTCTAGTTTCA
CTTTTTGTTTCGCGGCGGGCGACCTTTGCTCCTTGTTTGATTTTGCTAGGTGAAGTCGGAGCTGCTTCGTTGTGGTAATG
AAGCTGGGTAACGATGACACACTACAGTTTCTTTCTAGGGGTGTTGTTGCTGAACATGAATAGGATGTGGCGCTTAGGCA
GCTTGGGCTGATGTCCATTGTGGGATGTTGAGGCCGCTTGATCATTATGGCAGCGTGTTAGGTATCGATGTTGTATTCTA
AAGTCGGAGCTGCTGTGTCGCTTGGCGGTAAGCTCGGCAACGATGACAGATTGCAAAGTCGGAACCTCCTATATTGCTCT
TGGTCAAATTTGGTATCGACACCCTATGTTGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10498.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis