Browse Element(s) Details


Os.1054.1.A1_at

Description gb:CB646265
DB_XREF= gi:29641258
DB_XREF=OSJNEb08J19.r
CLONE=OSJNEb08J19
TID=Os.1054.1
CNT=4
FEA=mRNA
TIER=ConsEnd
STK=1
UG=Os.1054 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0494A10.22 (P0494A10.22), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0290011/11HGA6, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g02890Os.52233.1.S1_at11/111+1044778..1052216Phosphatidyl serine synthase family protein
LOC_Os01g02900Os.1054.1.A1_at11/111+1053985..1056532HGA6, putative, expressed
LOC_Os01g02910OsAffx.10885.2.S1_x_at11/111+1063480..1066628glycosyltransferase, putative, expressed
LOC_Os01g02920Os.34721.1.S1_at11/111+1068764..1071631glycosyltransferase, putative, expressed
LOC_Os01g02930Os.32123.1.S1_at11/111+1075367..1078474glycosyltransferase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.1054.1.A1_at--901--7611Chr01:1054561..1054585 (25 bp)
GGGAAGCTGATCAACTCGTGCGACG
LOC_Os01g02900
Os.1054.1.A1_at--835--2211Chr01:1054299..1054323 (25 bp)
ACAAGAGAGGGTTCGCCTTCATGAA
LOC_Os01g02900
Os.1054.1.A1_at--467--8531Chr01:1054263..1054287 (25 bp)
TGGACGGCCAGGACATCACCATTGA
LOC_Os01g02900
Os.1054.1.A1_at--641--2091Chr01:1054251..1054275 (25 bp)
ACATCACCATTGACGTCACCCGATT
LOC_Os01g02900
Os.1054.1.A1_at--88--9691Chr01:1054236..1054260 (25 bp)
TCACCCGATTCAGGCCAGTGTTGCA
LOC_Os01g02900
Os.1054.1.A1_at--543--6671Chr01:1054217..1054241 (25 bp)
GTTGCAGCAAGCTCTCGACAACCTT
LOC_Os01g02900
Os.1054.1.A1_at--777--4311Chr01:1054196..1054220 (25 bp)
CCTTGCCACCAAGTAGATTATGATT
LOC_Os01g02900
Os.1054.1.A1_at--826--10391Chr01:1054168..1054192 (25 bp)
TTTTGTTCCTAGTTCATCTCATCAC
LOC_Os01g02900
Os.1054.1.A1_at--747--3551Chr01:1054154..1054178 (25 bp)
CATCTCATCACATTCACATTCTTTT
LOC_Os01g02900
Os.1054.1.A1_at--605--9691Chr01:1054141..1054165 (25 bp)
TCACATTCTTTTACCCTCTTCTTTT
LOC_Os01g02900
Os.1054.1.A1_at--730--3651Chr01:1054124..1054148 (25 bp)
CTTCTTTTCCATCTCTCGAAGATTA
LOC_Os01g02900
Target Sequence 
GGGAAGCTGATCAACTCGTGCGACGCGCTGCTCGGCGTCCATGGCGCCGGCCTGACGAACATGATGTTCCTGCCNCCGGG
AGCGACGATGGTGCAGGTGGTGCCATGGGGCGGCCTCCAGTGGATCGCGCGCATGGACTACGGCGAGCCGGCGGCGGCGA
TGGGGCTCAACTACATCCAGTACGAGATNGCCGTCGCCGAGAGCTCGCTCAAGGACAAGTACCCCGCCGGCGACGAGATC
TTCACCAACCCGACGGGTNTGCACAAGAGAGGGTTCGCCTTCATGAAGCAGACGCTCATGGACGGCCAGGACATCACCAT
TGACGTCACCCGATTCAGGCCAGTGTTGCAGCAAGCTCTCGACAACCTTGCCACCAAGTAGATTATGATTACATTTTGTT
CCTAGTTCATCTCATCACATTCACATTCTTTTACCCTCTTCTTTTCCATCTCTCGAAGATTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.1054.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis