Browse Element(s) Details


Os.34721.1.S1_at

Description gb:AK070385.1
DB_XREF= gi:32980409
TID=Os.34721.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.34721 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0494A10.25 (P0494A10.25), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023054L18, full insert sequence.
FL= gb:AK070385.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0292011/11glycosyltransferase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g02890Os.52233.1.S1_at11/111+1044778..1052216Phosphatidyl serine synthase family protein
LOC_Os01g02900Os.1054.1.A1_at11/111+1053985..1056532HGA6, putative, expressed
LOC_Os01g02910OsAffx.10885.2.S1_x_at11/111+1063480..1066628glycosyltransferase, putative, expressed
LOC_Os01g02920Os.34721.1.S1_at11/111+1068764..1071631glycosyltransferase, putative, expressed
LOC_Os01g02930Os.32123.1.S1_at11/111+1075367..1078474glycosyltransferase, putative, expressed
LOC_Os01g02940Os.11246.1.S1_at11/111+1086644..1090326glycosyltransferase, putative, expressed
LOC_Os01g02950OsAffx.23093.1.S1_at11/111+1094382..1095744hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.34721.1.S1_at--967--4591Chr01:1069258..1069282 (25 bp)
GCGACGCCATGGATTACCTCAAACA
LOC_Os01g02920
Os.34721.1.S1_at--698--2391Chr01:1069238..1069262 (25 bp)
AAACACCAGTAGAGGCGAGCTCCAT
LOC_Os01g02920
Os.34721.1.S1_at--1021--5891Chr01:1069222..1069246 (25 bp)
GAGCTCCATCCACAAAGACTACTGT
LOC_Os01g02920
Os.34721.1.S1_at--1087--5691Chr01:1069206..1069230 (25 bp)
GACTACTGTAATTAGCTACTAGCTG
LOC_Os01g02920
Os.34721.1.S1_at--248--5271Chr01:1069163..1069187 (25 bp)
GAATGCCTAGCTGCAACATTTTCAT
LOC_Os01g02920
Os.34721.1.S1_at--336--10331Chr01:1069144..1069168 (25 bp)
TTTCATTTTCGTTCTCTATGCTTTT
LOC_Os01g02920
Os.34721.1.S1_at--172--9551Chr01:1069107..1069131 (25 bp)
TCTATTCTTTCGAGTTCTTTCACAG
LOC_Os01g02920
Os.34721.1.S1_at--486--2051Chr01:1069032..1069056 (25 bp)
ACTTCTCTTTGTATTCCCTTTGATG
LOC_Os01g02920
Os.34721.1.S1_at--737--3171Chr01:1068958..1068982 (25 bp)
AATTGTGTTCGCATTTGGTGATCTC
LOC_Os01g02920
Os.34721.1.S1_at--972--8611Chr01:1068943..1068967 (25 bp)
TGGTGATCTCTAGTTTCAACTCGAT
LOC_Os01g02920
Os.34721.1.S1_at--1128--6951Chr01:1068838..1068862 (25 bp)
GTAGCACATATGCACATGTCGTTGT
LOC_Os01g02920
Target Sequence 
GCGACGCCATGGATTACCTCAAACACCAGTAGAGGCGAGCTCCATCCACAAAGACTACTGTAATTAGCTACTAGCTGCAA
CATTTTTTTTTTTTTTGAATGCCTAGCTGCAACATTTTCATTTTCGTTCTCTATGCTTTTTTTTTTTTGCTTTCTATTCT
TTCGAGTTCTTTCACAGAAAAAAGAAATCGATCGATTATTTGATCAGGATTACAGTTACATTATACTACTTCTCTTTGTA
TTCCCTTTGATGCACATAATGGAGGATGGAATGGAACGAAATCGATTCATTATTAGCACTGAATTGTGTTCGCATTTGGT
GATCTCTAGTTTCAACTCGATCAAATAAGTGTTCATTTTTTTTTTAAAAAAAGTACAATTAGAATACCCAACAACTACTA
GAAATTGTACAAGTACATTGTGTAGCACATATGCACATGTCGTTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.34721.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis