Browse Element(s) Details


Os.52233.1.S1_at

Description gb:AK065788.1
DB_XREF= gi:32975806
TID=Os.52233.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52233 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013041H16, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013041H16, full insert sequence.
FL= gb:AK065788.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0289011/11Phosphatidyl serine synthase family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g02890Os.52233.1.S1_at11/111+1044778..1052216Phosphatidyl serine synthase family protein
LOC_Os01g02900Os.1054.1.A1_at11/111+1053985..1056532HGA6, putative, expressed
LOC_Os01g02910OsAffx.10885.2.S1_x_at11/111+1063480..1066628glycosyltransferase, putative, expressed
LOC_Os01g02920Os.34721.1.S1_at11/111+1068764..1071631glycosyltransferase, putative, expressed
LOC_Os01g02930Os.32123.1.S1_at11/111+1075367..1078474glycosyltransferase, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006659biological_processphosphatidylserine biosynthesis
GO:0003882molecular_functionCDP-diacylglycerol-serine O-phosphatidyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52233.1.S1_at--77--3611Chr01:1048922..1048946 (25 bp)
CTTGATTGTTTACCGACTTGTCCTT
LOC_Os01g02890
Os.52233.1.S1_at--428--6491Chr01:1048961..1048985 (25 bp)
GATACCAACCATTCGCGAGTACAAT
LOC_Os01g02890
Os.52233.1.S1_at--325--4891Chr01:1049427..1049451 (25 bp)
GCTTTCCCTAGCTATTTGCATTTTG
LOC_Os01g02890
Os.52233.1.S1_at--1083--8071Chr01:1049451..1049475 (25 bp)
GGAGCTTCTACTATGCATCAAGTTT
LOC_Os01g02890
Os.52233.1.S1_at--339--2111Chr01:1049569..1049589 (21 bp)
ACATGGTCTCTTTCCGAAGTCGATG
LOC_Os01g02890
Os.52233.1.S1_at--948--6351Chr01:1049586..1049610 (25 bp)
GATGCCGTCATGGTTGTTCATAGCC
LOC_Os01g02890
Os.52233.1.S1_at--1028--6291Chr01:1049634..1049658 (25 bp)
GATGATGTTCCTTCTTGTGTGGACT
LOC_Os01g02890
Os.52233.1.S1_at--103--10651Chr01:1049725..1049749 (25 bp)
TTCCTCCTCCATTCAATATTGTCGT
LOC_Os01g02890
Os.52233.1.S1_at--479--8731Chr01:1049835..1049859 (25 bp)
TGTCTTTGCCTTTGTATTCCATGAG
LOC_Os01g02890
Os.52233.1.S1_at--925--10671Chr01:1049878..1049902 (25 bp)
TTCCTTCCTGTGATGTAACTCTGAC
LOC_Os01g02890
Os.52233.1.S1_at--765--10331Chr01:1049911..1049935 (25 bp)
TTTAGTGTTCCTTTGGTCCAATCTA
LOC_Os01g02890
Target Sequence 
CTTGATTGTTTACCGACTTGTCCTTTGGTGGTTAATTGCGATACCAACCATTCGCGAGTACAATACATACTTACAAGACA
GGAAACCTGTTAAAAAGGTGGGGTCTTTCTGTTGGCTTTCCCTAGCTATTTGCATTTTGGAGCTTCTACTATGCATCAAG
TTTGGACATGGTCTCTTTCCGAAGTCGATGCCGTCATGGTTGTTCATAGCCTGGACGACCGTGGCGTCGCTTCTGATGAT
GTTCCTTCTTGTGTGGACTTGGAAAATTTACCGAACAATGATAAGGAAAAGGCTATGATTCTTCTGTTGCTTTGCTCTCA
ATTCTTTCCTCCTCCATTCAATATTGTCGTGTAAATATTCATTCAAAAAAATCTGTACATGTGGTAGTAGCCATTAATTT
GGTGGTCTCGAGAAGGATCATCATAAGGAATTTTATGTCTTTGCCTTTGTATTCCATGAGCCAAAATGGCATTCCCTTTT
CCTTCCTGTGATGTAACTCTGACAGCCAAACTTTAGTGTTCCTTTGGTCCAATCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52233.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis