Browse Element(s) Details


OsAffx.10885.2.S1_x_at

Description tigr:9629.m00203
TID=OsAffx.10885.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0291011/11glycosyltransferase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g02890Os.52233.1.S1_at11/111+1044778..1052216Phosphatidyl serine synthase family protein
LOC_Os01g02900Os.1054.1.A1_at11/111+1053985..1056532HGA6, putative, expressed
LOC_Os01g02910OsAffx.10885.2.S1_x_at11/111+1063480..1066628glycosyltransferase, putative, expressed
LOC_Os01g02920Os.34721.1.S1_at11/111+1068764..1071631glycosyltransferase, putative, expressed
LOC_Os01g02930Os.32123.1.S1_at11/111+1075367..1078474glycosyltransferase, putative, expressed
LOC_Os01g02940Os.11246.1.S1_at11/111+1086644..1090326glycosyltransferase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.10885.2.S1_x_at--541--5691Chr01:1064055..1064079 (25 bp)
GACTTCACGAGGTTCTTGCGCCACG
LOC_Os01g02910
OsAffx.10885.2.S1_x_at--708--5611Chr01:1064013..1064037 (25 bp)
GACAAGCCCATGGTGCTCGGCGAGA
LOC_Os01g02910
OsAffx.10885.2.S1_x_at--478--992Chr09:18082182..18082253 (24 bp)
AGGATGCTGATCATATCGCGGCGGC
NONE
OsAffx.10885.2.S1_x_at--72--4691Chr01:1063948..1063972 (25 bp)
GCGGACGAGGAAGCTGCTGAACCTA
LOC_Os01g02910
OsAffx.10885.2.S1_x_at--223--8991Chr01:1063931..1063955 (25 bp)
TGAACCTACGGCAGGTGGCGGCCAT
LOC_Os01g02910
OsAffx.10885.2.S1_x_at--228--7511Chr01:1063711..1063735 (25 bp)
GTGGATGGCGACCAACTTCTACGGC
LOC_Os01g02910
OsAffx.10885.2.S1_x_at--1055--4331Chr01:1063673..1063697 (25 bp)
CCATGGAGCTCAGGTACGTGGAGTA
LOC_Os01g02910
OsAffx.10885.2.S1_x_at--177--6971Chr01:1063612..1063636 (25 bp)
GTACCCGAGGGAGCACGCCGTGTTC
LOC_Os01g02910
OsAffx.10885.2.S1_x_at--503--5291Chr01:1063555..1063579 (25 bp)
GAAGGCGCTCGCTGACATCGTCATG
LOC_Os01g02910
OsAffx.10885.2.S1_x_at--165--7131Chr01:1063536..1063560 (25 bp)
GTCATGACGCAGGATGTCAAGCTCA
LOC_Os01g02910
OsAffx.10885.2.S1_x_at--598--3251Chr01:1063513..1063537 (25 bp)
CAACCTGCGAAGGTTCAGGCCTACG
LOC_Os01g02910
Target Sequence 
GACTTCACGAGGTTCTTGCGCCACGCGTACGGGCTGAGGAGGGACAAGCCCATGGTGCTCGGCGAGACGAGCGGCAAGAA
GCCGAGGATGCTGATCATATCGCGGCGGCGGACGAGGAAGCTGCTGAACCTACGGCAGGTGGCGGCCATGGCGAGGGAGC
TGGGATTCGAGGTGGTGGTCTCCGAGGCCGGCGTCGGCGGCGGCAGCGGCGGCGTGAAGAGGTTCGCGTCGGCGGTGAAC
TCGTGCGACGTGCTGGTGGGCGTCCACGGCGCCGGGCTGACGAACCAGGCGTTCCTCCCCCGGGGCGGCGTGGTGGTGCA
GATCGTGCCGTGGGGGAGGATGGAGTGGATGGCGACCAACTTCTACGGCGCGCCGGCGGCGGCCATGGAGCTCAGGTACG
TGGAGTACCACGTGGCGGCGGAGGAGAGCAGCCTGGCGAGGAGGTACCCGAGGGAGCACGCCGTGTTCAGGGACCCCATG
GCCATCCATGGCCAGGGGTGGAAGGCGCTCGCTGACATCGTCATGACGCAGGATGTCAAGCTCAACCTGCGAAGGTTCAG
GCCTACG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.10885.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis