Browse Element(s) Details


Os.11246.1.S1_at

Description gb:CD670986
DB_XREF= gi:38568771
DB_XREF=OsMR407
TID=Os.11246.1
CNT=12
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.11246 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0494A10.29 (P0494A10.29), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0294011/11glycosyltransferase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g02910OsAffx.10885.2.S1_x_at11/111+1063480..1066628glycosyltransferase, putative, expressed
LOC_Os01g02920Os.34721.1.S1_at11/111+1068764..1071631glycosyltransferase, putative, expressed
LOC_Os01g02930Os.32123.1.S1_at11/111+1075367..1078474glycosyltransferase, putative, expressed
LOC_Os01g02940Os.11246.1.S1_at11/111+1086644..1090326glycosyltransferase, putative, expressed
LOC_Os01g02950OsAffx.23093.1.S1_at11/111+1094382..1095744hypothetical protein
LOC_Os01g02960Os.32335.1.S1_at11/111+1100584..1103692expressed protein
LOC_Os01g02960OsAffx.23093.2.S1_at1/111+1100584..1103692expressed protein
LOC_Os01g02960Os.32335.2.S1_x_at1/111+1100584..1103692expressed protein
LOC_Os01g02970NANA1+1109235..1110135retrotransposon protein, putative, Ty3-gypsy subclass

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11246.1.S1_at--192--6991Chr01:1087209..1087233 (25 bp)
GTACCTGGAGTACCGGATCACGCCG
LOC_Os01g02940
Os.11246.1.S1_at--686--7271Chr01:1087116..1087140 (25 bp)
GTCCAAAGGCTGGAATTCTCTCAAG
LOC_Os01g02940
Os.11246.1.S1_at--1099--91Chr01:1087102..1087126 (25 bp)
ATTCTCTCAAGGAAGCCTACCTCGA
LOC_Os01g02940
Os.11246.1.S1_at--1137--2211Chr01:1087078..1087102 (25 bp)
ACAAGCAGGATGTTCGTCTCGACAT
LOC_Os01g02940
Os.11246.1.S1_at--1085--5351Chr01:1087053..1087077 (25 bp)
GAAGAGGTTCCGACCAATCCTCAAG
LOC_Os01g02940
Os.11246.1.S1_at--770--4691Chr01:1087000..1087024 (25 bp)
GCGGCAACAATAACACCACACACAA
LOC_Os01g02940
Os.11246.1.S1_at--632--4371Chr01:1086985..1087009 (25 bp)
CCACACACAACTAGCCATTTCGAAT
LOC_Os01g02940
Os.11246.1.S1_at--527--531Chr01:1086947..1086971 (25 bp)
ATCGCCATGGATGCATCAATGTACA
LOC_Os01g02940
Os.11246.1.S1_at--432--2991Chr01:1086930..1086954 (25 bp)
AATGTACACCATCTTCTTGATCTTT
LOC_Os01g02940
Os.11246.1.S1_at--964--6951Chr01:1086853..1086877 (25 bp)
GTAGCAGCTAGCAGATCGACCAAAT
LOC_Os01g02940
Os.11246.1.S1_at--1086--6631Chr01:1086728..1086752 (25 bp)
GTTGATCATGTATACTCCTATAGTA
LOC_Os01g02940
Target Sequence 
GTACCTGGAGTACCGGATCACGCCGGAGGAGAGCACGCTGATCGATCAGTACCCGCGAGACCACCCCATCTTCACCGACC
CCGATGGCGTCAAGTCCAAAGGCTGGAATTCTCTCAAGGAAGCCTACCTCGACAAGCAGGATGTTCGTCTCGACATGAAG
AGGTTCCGACCAATCCTCAAGAAGGCCATTGCTCACCTCCGCAAGAACAGCGGCAACAATAACACCACACACAACTAGCC
ATTTCGAATTTTTCTTCGATCGATCGCCATGGATGCATCAATGTACACCATCTTCTTGATCTTTTAATCTTTTCTTCTTC
TTTTACTATCTTTTCACTAGTAAGTAAAAGTAGACTGTAGCAGCTAGCAGATCGACCAAATGTATGATATTTCAGAGGAG
GAGATCAGCAGCAATACTATATTCATCTCTTTGTTTTTTTTTTATCTCGATTGGGAGATGANGTTCATGAGTGGTAGTTG
AGTTGATCATGTATACTCCTATAGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11246.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis