Browse Element(s) Details


Os.32335.1.S1_at

Description gb:AK105256.1
DB_XREF= gi:32990465
TID=Os.32335.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.32335 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0494A10.32 (P0494A10.32), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-114-F05, full insert sequence.
FL= gb:AK105256.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0296011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g02930Os.32123.1.S1_at11/111+1075367..1078474glycosyltransferase, putative, expressed
LOC_Os01g02940Os.11246.1.S1_at11/111+1086644..1090326glycosyltransferase, putative, expressed
LOC_Os01g02950OsAffx.23093.1.S1_at11/111+1094382..1095744hypothetical protein
LOC_Os01g02960Os.32335.1.S1_at11/111+1100584..1103692expressed protein
LOC_Os01g02960OsAffx.23093.2.S1_at1/111+1100584..1103692expressed protein
LOC_Os01g02960Os.32335.2.S1_x_at1/111+1100584..1103692expressed protein
LOC_Os01g02970NANA1+1109235..1110135retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g02980OsAffx.10886.1.S1_at11/111+1117121..1123551hypothetical protein
LOC_Os01g02980OsAffx.10886.2.S1_at9/111+1117121..1123551hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.32335.1.S1_at--349--6111Chr01:1103333..1103357 (25 bp)
GAGTGCTGAATGGTACTCCCTCAGT
LOC_Os01g02960
Os.32335.1.S1_at--1083--551Chr01:1103373..1103397 (25 bp)
ATCCTGAGTATGAACCTGGACACGT
LOC_Os01g02960
Os.32335.1.S1_at--239--8531Chr01:1103389..1103413 (25 bp)
TGGACACGTGTGTGGGCTCATACCC
LOC_Os01g02960
Os.32335.1.S1_at--601--8311Chr01:1103403..1103427 (25 bp)
GGCTCATACCCAGGATTTGTTCTTT
LOC_Os01g02960
Os.32335.1.S1_at--987--191Chr01:1103454..1103478 (25 bp)
ATTTCTGTTGCTTATCATGTGCGCC
LOC_Os01g02960
Os.32335.1.S1_at--960--10151Chr01:1103466..1103490 (25 bp)
TATCATGTGCGCCTAGCATGTCGCT
LOC_Os01g02960
Os.32335.1.S1_at--906--10011Chr01:1103479..1103503 (25 bp)
TAGCATGTCGCTTTTTTGGCTTACA
LOC_Os01g02960
Os.32335.1.S1_at--740--3671Chr01:1103489..1103513 (25 bp)
CTTTTTTGGCTTACATCCTGTGAGA
LOC_Os01g02960
Os.32335.1.S1_at--926--5552Chr01:1103560..1103584 (25 bp)
GAAACCATCCCTGATTTTGGAGTTG
LOC_Os01g02960
Os.32335.1.S1_at--452--66310Chr12:898167..898191 (25 bp)
GTTGGGATGATTCCACTCACATGTT
NONE
Os.32335.1.S1_at--134--4379Chr09:979670..979694 (25 bp)
CCACTCACATGTTTGGTTTGTAGGA
NONE
Target Sequence 
GAGTGCTGAATGGTACTCCCTCAGTTAAAAAAAAAAAACAATCCTGAGTATGAACCTGGACACGTGTGTGGGCTCATACC
CAGGATTTGTTCTTTTCTTTTTAGGACGGAGAGAGTAGTATATTTCTGTTGCTTATCATGTGCGCCTAGCATGTCGCTTT
TTTGGCTTACATCCTGTGAGATGTAATGTTAGCATGTGTTTGGTTTCGGGACTAAGTGGGATGGGATGAAACCATCCCTG
ATTTTGGAGTTGGGATGATTCCACTCACATGTTTGGTTTGTAGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.32335.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis