Browse Element(s) Details


OsAffx.23093.1.S1_at

Description gb:NM_184130.1
DB_XREF= gi:34895351
GEN=P0494A10.30
TID=OsAffx.23093.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0494A10.30 (P0494A10.30), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0295011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g02920Os.34721.1.S1_at11/111+1068764..1071631glycosyltransferase, putative, expressed
LOC_Os01g02930Os.32123.1.S1_at11/111+1075367..1078474glycosyltransferase, putative, expressed
LOC_Os01g02940Os.11246.1.S1_at11/111+1086644..1090326glycosyltransferase, putative, expressed
LOC_Os01g02950OsAffx.23093.1.S1_at11/111+1094382..1095744hypothetical protein
LOC_Os01g02960Os.32335.1.S1_at11/111+1100584..1103692expressed protein
LOC_Os01g02960OsAffx.23093.2.S1_at1/111+1100584..1103692expressed protein
LOC_Os01g02960Os.32335.2.S1_x_at1/111+1100584..1103692expressed protein
LOC_Os01g02970NANA1+1109235..1110135retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g02980OsAffx.10886.1.S1_at11/111+1117121..1123551hypothetical protein
LOC_Os01g02980OsAffx.10886.2.S1_at9/111+1117121..1123551hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23093.1.S1_at--757--5271Chr01:1095106..1095130 (25 bp)
GAATGAGCACCGTTCCATCGGCTGC
LOC_Os01g02950
OsAffx.23093.1.S1_at--927--31Chr01:1094910..1094934 (25 bp)
ATTGGGTTGCCACATGTTATGCCGA
LOC_Os01g02950
OsAffx.23093.1.S1_at--167--591Chr01:1094892..1094916 (25 bp)
ATGCCGATTCCTATTCTTAGCGTGA
LOC_Os01g02950
OsAffx.23093.1.S1_at--885--5271Chr01:1094839..1094863 (25 bp)
GAATGATATCTTTCAGGAGCCAATA
LOC_Os01g02950
OsAffx.23093.1.S1_at--668--8071Chr01:1094824..1094848 (25 bp)
GGAGCCAATACCTGATCACGTTAAT
LOC_Os01g02950
OsAffx.23093.1.S1_at--1139--7631Chr01:1094780..1094804 (25 bp)
GGGATCGACTGGTGGCCAAAGCCAA
LOC_Os01g02950
OsAffx.23093.1.S1_at--495--2451Chr01:1094727..1094751 (25 bp)
AACAAGGTCCTGTCTTTCACGAAGA
LOC_Os01g02950
OsAffx.23093.1.S1_at--837--4111Chr01:1094708..1094732 (25 bp)
CGAAGATATCTCAACACGGCGAATT
LOC_Os01g02950
OsAffx.23093.1.S1_at--1153--2171Chr01:1094695..1094719 (25 bp)
ACACGGCGAATTGCGGTGGCTTACA
LOC_Os01g02950
OsAffx.23093.1.S1_at--517--10471Chr01:1094675..1094699 (25 bp)
TTACACCCTATCTCATTGCTACTGA
LOC_Os01g02950
OsAffx.23093.1.S1_at--1102--9911Chr01:1094656..1094680 (25 bp)
TACTGACTTCAGCTCATACCTACAG
LOC_Os01g02950
Target Sequence 
GAATGAGCACCGTTCCATCGGCTGCGTCTCTGGTGCCATCAAGTTCGTCGCCTTGATCGGCTACTGCGAAGAAGCTTCTT
GTCCCGCCAACGAGGTGAAGCTCAAGACATGGTCACTCTCCCCAGATTTCAAGCACTGGAAGGAGGAAACGACATTGACT
GTCGGAGACAGCTGGGCGAGCGAGAGCTTCAACGAGATTGGGTTGCCACATGTTATGCCGATTCCTATTCTTAGCGTGAA
CGAAGATGGGATCATGTATGCCGTTCTGAATGATATCTTTCAGGAGCCAATACCTGATCACGTTAATGAATTCGGCCAAG
TTCTTGGGGATCGACTGGTGGCCAAAGCCAATTATATGATCCGCTTTGACATTCTGCAGAACAAGGTCCTGTCTTTCACG
AAGATATCTCAACACGGCGAATTGCGGTGGCTTACACCCTATCTCATTGCTACTGACTTCAGCTCATACCTACAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23093.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis