Browse Element(s) Details


Os.32335.2.S1_x_at

Description gb:NM_184132.1
DB_XREF= gi:34895355
GEN=P0494A10.32
TID=Os.32335.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.32335 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0494A10.32 (P0494A10.32), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0494A10.32 (P0494A10.32), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g029601/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g02930Os.32123.1.S1_at11/111+1075367..1078474glycosyltransferase, putative, expressed
LOC_Os01g02940Os.11246.1.S1_at11/111+1086644..1090326glycosyltransferase, putative, expressed
LOC_Os01g02950OsAffx.23093.1.S1_at11/111+1094382..1095744hypothetical protein
LOC_Os01g02960Os.32335.1.S1_at11/111+1100584..1103692expressed protein
LOC_Os01g02960OsAffx.23093.2.S1_at1/111+1100584..1103692expressed protein
LOC_Os01g02960Os.32335.2.S1_x_at1/111+1100584..1103692expressed protein
LOC_Os01g02970NANA1+1109235..1110135retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g02980OsAffx.10886.1.S1_at11/111+1117121..1123551hypothetical protein
LOC_Os01g02980OsAffx.10886.2.S1_at9/111+1117121..1123551hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.32335.2.S1_x_at--305--2294Chr02:18333370..18333389 (20 bp)
AAATGGGATGGACGCCGTTTGCCAT
NONE
Os.32335.2.S1_x_at--713--9056Chr01:1103715..1103739 (25 bp)
TGCATCCACGCGTGGAACAACCGGA
NONE
Os.32335.2.S1_x_at--88--9236Chr01:1103719..1103743 (25 bp)
TCCACGCGTGGAACAACCGGATCAA
NONE
Os.32335.2.S1_x_at--607--1836Chr01:1103722..1103746 (25 bp)
ACGCGTGGAACAACCGGATCAAGCA
NONE
Os.32335.2.S1_x_at--787--8515Chr01:1103727..1103751 (25 bp)
TGGAACAACCGGATCAAGCACAGCG
NONE
Os.32335.2.S1_x_at--635--1776Chr04:20242192..20242261 (25 bp)
ACCGGATCAAGCACAGCGGCAGCAG
NONE
Os.32335.2.S1_x_at--264--3916Chr01:1103816..1103840 (25 bp)
CTGGATCGGGAGATCCCCTGCGCCG
NONE
Os.32335.2.S1_x_at--1056--2613Chr01:1103982..1104006 (25 bp)
AACCGCTCTCGTCGAGCATCACGAT
NONE
Os.32335.2.S1_x_at--752--9413Chr01:1103990..1104014 (25 bp)
TCGTCGAGCATCACGATGAGCGGCG
NONE
Os.32335.2.S1_x_at--1043--3911Chr01:1104039..1104063 (25 bp)
CGGCGGCAACCGGTGTTAAGGCAAG
NONE
Os.32335.2.S1_x_at--1134--1653Chr01:1104076..1104100 (25 bp)
AGCGCCGGCGGTCGCAGAGGTGGTG
NONE
Target Sequence 
AAATGGGATGGACGCCGTTTGCCATCACCGTCAACGACCGTCGCCTGCGCCACCTGCATCCACGCGTGGAACAACCGGAT
CAAGCACAGCGGCAGCAGCAGGACGGCCACCACCGCCGGAGCACCCAACCCGCTGGCCCACCGTCGTCGCCGCGGCTGGA
TCGGGAGATCCCCTGCGCCGGATCCGCCGCCGCCGCTCTCCCTACCTCCAAGTTTCGCCGCCGCCGAGTCCCCCTTCTCT
GGATCCGCCGCCGCCGCCCTCCCTACCTCCAAGCTTCGCCGCCACTCGAGCCCGCCGCGTCGACATCACCGCAGCTGCCG
CAACCGCTCTCGTCGAGCATCACGATGAGCGGCGGGATGGCGCCGAGCATCTCGCTCGCGGCGGCAACCGGTGTTAAGGC
AAGGGGTCGTGGAGGAGCGCCGGCGGTCGCAGAGGTGGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.32335.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis