Browse Element(s) Details


Os.10556.1.S1_at

Description gb:CA763748
DB_XREF= gi:25807787
DB_XREF=BR060012A10G02.ab1
CLONE=BR060012A10G02.ab1
TID=Os.10556.1
CNT=2
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.10556 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1586011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g15840OsAffx.12062.1.S1_at11/112+8956012..8956689hypothetical protein
LOC_Os02g15850OsAffx.2633.1.S1_at11/112+8966532..8967177hypothetical protein
LOC_Os02g15860Os.10556.1.S1_at11/112+8973639..8974476expressed protein
LOC_Os02g15870Os.24599.1.A1_at10/112+8976765..8981138Molybdenum cofactor biosynthesis protein 1 B, putative, expressed
LOC_Os02g15870Os.51870.1.S1_at1/112+8976765..8981138Molybdenum cofactor biosynthesis protein 1 B, putative, expressed
LOC_Os02g15880Os.10875.2.S1_x_at10/112+8984540..8989569expressed protein
LOC_Os02g15880Os.10875.2.S1_at7/112+8984540..8989569expressed protein
LOC_Os02g15890OsAffx.12063.1.S1_at11/112+8992665..8994446hypothetical protein
LOC_Os02g15890OsAffx.12063.1.S1_x_at11/112+8992665..8994446hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10556.1.S1_at--500--7671Chr02:8974115..8974139 (25 bp)
GGGATATTTCCTAATACCACGAATC
LOC_Os02g15860
Os.10556.1.S1_at--520--1711Chr02:8974130..8974154 (25 bp)
ACCACGAATCCGGATATGCTGCTCA
LOC_Os02g15860
Os.10556.1.S1_at--325--9951Chr02:8974189..8974213 (25 bp)
TACGCTGCACTATAGCCCCTACATT
LOC_Os02g15860
Os.10556.1.S1_at--218--3671Chr02:8974198..8974222 (25 bp)
CTATAGCCCCTACATTTACGGTTCT
LOC_Os02g15860
Os.10556.1.S1_at--994--7851Chr02:8974290..8974314 (25 bp)
GGTATGTTAGATGCCCTTCCAAGTG
LOC_Os02g15860
Os.10556.1.S1_at--1150--9151Chr02:8974301..8974325 (25 bp)
TGCCCTTCCAAGTGTGTGTTTCGAC
LOC_Os02g15860
Os.10556.1.S1_at--506--7431Chr02:8974316..8974340 (25 bp)
GTGTTTCGACTAAGCCATATCATAT
LOC_Os02g15860
Os.10556.1.S1_at--736--231Chr02:8974337..8974361 (25 bp)
ATATTTTCTTATGTTGTGCTGCACA
LOC_Os02g15860
Os.10556.1.S1_at--930--4751Chr02:8974354..8974378 (25 bp)
GCTGCACATTATATAGTGTACTGGA
LOC_Os02g15860
Os.10556.1.S1_at--805--7431Chr02:8974369..8974393 (25 bp)
GTGTACTGGACACTGTTGTATTATA
LOC_Os02g15860
Os.10556.1.S1_at--89--6651Chr02:8974383..8974407 (25 bp)
GTTGTATTATATAGGCACGTGCATC
LOC_Os02g15860
Target Sequence 
GGGATATTTCCTAATACCACGAATCCGGATATGCTGCTCANTAGCAACTTAATTTTCCTCCTCTCCGACCCGACTACGCT
GCACTATAGCCCCTACATTTACGGTTCTTCTTGGTGGACGCGAGCTGNCCGATCGACCAAGCCGTAAACGTTTTTGCATC
CGACGTACAGTACGGGGTATGTTAGATGCCCTTCCAAGTGTGTGTTTCGACTAAGCCATATCATATTTTCTTATGTTGTG
CTGCACATTATATAGTGTACTGGACACTGTTGTATTATATAGGCACGTGCATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10556.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis