Browse Element(s) Details


Os.10568.1.S1_at

Description gb:AK071123.1
DB_XREF= gi:32981146
TID=Os.10568.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.10568 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023081N23, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023081N23, full insert sequence.
FL= gb:AK071123.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1886011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g18830NANA12+10907479..10910121retrotransposon protein, putative, unclassified
LOC_Os12g18840NANA12+10913871..10918073retrotransposon protein, putative, unclassified
LOC_Os12g18850OsAffx.31801.5.S1_at9/1112+10926473..10929185hypothetical protein
LOC_Os12g18850OsAffx.30013.1.S1_x_at1/1112+10926473..10929185hypothetical protein
LOC_Os12g18860Os.10568.1.S1_at11/1112+10932948..10939812expressed protein
LOC_Os12g18860Os.27155.1.S1_at1/1112+10932948..10939812expressed protein
LOC_Os12g18860OsAffx.2817.1.S1_at1/1112+10932948..10939812expressed protein
LOC_Os12g18870NANA12+10945860..10946163NA
LOC_Os12g18880Os.12841.1.S1_at9/1112+10956869..10959695Mago nashi protein homolog, putative, expressed
LOC_Os12g18900Os.50823.1.S1_at10/1112+10960706..10969935cysteine desulfurase, putative, expressed
LOC_Os12g18900OsAffx.19737.1.S1_x_at9/1112+10960706..10969935cysteine desulfurase, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10568.1.S1_at--352--8831Chr12:10933507..10933531 (25 bp)
TGATTTCTTTGAACCCTCGCGGAAG
LOC_Os12g18860
Os.10568.1.S1_at--299--3071Chr12:10933463..10933487 (25 bp)
AATCAAGGCCAACCCGTGATAGGAT
LOC_Os12g18860
Os.10568.1.S1_at--1016--9831Chr12:10933391..10933415 (25 bp)
TAAAGTTCTCATTCGACCATATGGA
LOC_Os12g18860
Os.10568.1.S1_at--283--1551Chr12:10933353..10933377 (25 bp)
AGCATTGACATCTTTGAGAGGCCAA
LOC_Os12g18860
Os.10568.1.S1_at--374--6611Chr12:10933283..10933307 (25 bp)
GATTGGACCGGATTTGGGCCAGTTA
LOC_Os12g18860
Os.10568.1.S1_at--770--10251Chr12:10933184..10933208 (25 bp)
TTTGTATTCACCCATGTGCTGGAAG
LOC_Os12g18860
Os.10568.1.S1_at--872--4951Chr12:10933154..10933178 (25 bp)
GCATAAGAGTTGGTTCGCCGAATCT
LOC_Os12g18860
Os.10568.1.S1_at--40--2751Chr12:10933047..10933071 (25 bp)
AAGAAGTGTATGTTGGTCCTCAGCA
LOC_Os12g18860
Os.10568.1.S1_at--934--6591Chr12:10933036..10933060 (25 bp)
GTTGGTCCTCAGCAAATGGTTGTTC
LOC_Os12g18860
Os.10568.1.S1_at--388--7271Chr12:10932983..10933007 (25 bp)
GTCCATGGATGGCAGCATTGTGTAT
LOC_Os12g18860
Os.10568.1.S1_at--494--3131Chr12:10932957..10932981 (25 bp)
AATTTACTATCTGTTGCTCTGCCAT
LOC_Os12g18860
Target Sequence 
TGATTTCTTTGAACCCTCGCGGAAGAGCACAGACCGAAGGGAGAAATCAAGGCCAACCCGTGATAGGATGAGAGGTGTTG
AACACAGATATAGCAATGTTGAGAAGACGGACAAATTAAAGTTCTCATTCGACCATATGGAGAAATCGAGGAGAAGCATT
GACATCTTTGAGAGGCCAAAGAAGAACATTGAACAGCTCGACTGTGGAAGGAAGAGCGTGGATAGATTGGACCGGATTTG
GGCCAGTTAAAAACTTTTTTNAACATCTTATACAAGGTATACATGGGGCTTGGTTGTTTTGGGGGGGTTTTACTTGTGTA
TTTATTTGTATTCACCCATGTGCTGGAAGGTGTGGCATAAGAGTTGGTTCGCCGAATCTAAAGGAGAGAAGAAGAAGAGC
TAGCTAATTGCTGACAATGTTGTTTGTCTCTGTTTAGAACTTGTACTGGTTTGTGTGGTGGAAGAAGTGTATGTTGGTCC
TCAGCAAATGGTTGTTCTGTTAGGGTTGTTAAAAAGTTGGGACTAGTCCATGGATGGCAGCATTGTGTATAAATTTACTA
TCTGTTGCTCTGCCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10568.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis