Browse Element(s) Details


Os.12841.1.S1_at

Description gb:AF338343.1
DB_XREF= gi:12802872
TID=Os.12841.1
CNT=18
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.12841 (NCBI UniGene Cluster)
DEF=Oryza sativa mago nashi-like protein mRNA, complete cds.
PROD=mago nashi-like protein
FL= gb:AK063847.1 gb:AK121477.1 gb:AF338343.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g188809/11Mago nashi protein homolog, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g18860Os.10568.1.S1_at11/1112+10932948..10939812expressed protein
LOC_Os12g18860Os.27155.1.S1_at1/1112+10932948..10939812expressed protein
LOC_Os12g18860OsAffx.2817.1.S1_at1/1112+10932948..10939812expressed protein
LOC_Os12g18870NANA12+10945860..10946163NA
LOC_Os12g18880Os.12841.1.S1_at9/1112+10956869..10959695Mago nashi protein homolog, putative, expressed
LOC_Os12g18900Os.50823.1.S1_at10/1112+10960706..10969935cysteine desulfurase, putative, expressed
LOC_Os12g18900OsAffx.19737.1.S1_x_at9/1112+10960706..10969935cysteine desulfurase, putative, expressed
LOC_Os12g18910OsAffx.31802.2.S1_at3/1112+10972867..10975770transposon protein, putative, unclassified
LOC_Os12g18910OsAffx.31802.1.S1_at2/1112+10972867..10975770transposon protein, putative, unclassified
LOC_Os12g18920OsAffx.31803.1.S1_at10/1112+10976384..10980149expressed protein
LOC_Os12g18930NANA12+10981873..10988317retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0007530biological_processsex determination
GO:0005634cellular_componentnucleus
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12841.1.S1_at--444--6171NONE
GAGGATCATCCAGGAGTCCGAGATT
NONE
Os.12841.1.S1_at--91--971Chr12:10957361..10957385 (25 bp)
AGGACGACAACAACTGGCCAGAGCC
LOC_Os12g18880
Os.12841.1.S1_at--935--8071Chr12:10957404..10957428 (25 bp)
GGAGCTCGAGATTGTTATGGGCAAC
LOC_Os12g18880
Os.12841.1.S1_at--182--8791Chr12:10957416..10957440 (25 bp)
TGTTATGGGCAACGAGCACATCTCC
LOC_Os12g18880
Os.12841.1.S1_at--263--4291NONE
CCTCGTCCAGGATCTGAAATGTTTC
NONE
Os.12841.1.S1_at--843--3451Chr12:10959454..10959478 (25 bp)
CAGTCTCTTAATTGTGTTATGGCCA
LOC_Os12g18880
Os.12841.1.S1_at--702--8771Chr12:10959468..10959492 (25 bp)
TGTTATGGCCAGTTTTAGAGAATTC
LOC_Os12g18880
Os.12841.1.S1_at--925--10411Chr12:10959500..10959524 (25 bp)
TTATGTATGATCCAGCGGGTTAACC
LOC_Os12g18880
Os.12841.1.S1_at--888--3051Chr12:10959558..10959582 (25 bp)
AATCTTAATACTTTGGTGCCTGGGA
LOC_Os12g18880
Os.12841.1.S1_at--1027--211Chr12:10959594..10959616 (23 bp)
ATTTGTGCAAGCTTTGGGTGCTCGT
LOC_Os12g18880
Os.12841.1.S1_at--1025--4871Chr12:10959602..10959626 (25 bp)
GCTTTGGGTGCTCGTTACTCAAGTA
LOC_Os12g18880
Target Sequence 
GAGGATCATCCAGGAGTCCGAGATTATGAAGGAGGACGACAACAACTGGCCAGAGCCCGACCGCGTNGGGGAGGCAGGAG
CTCGAGATTGTTATGGGCAACGAGCACATCTCCTTCACCACCTCCAAGATTGGCTCCCTCGTCGACGTCCAGACCAGCAA
GGACCCTGAGGGCCTCCGCATCTTCTACTACCTCGTCCAGGATCTGAAATGTTTCGTGTTTTCACTCATCAATCTCCACT
TCAAGATCAAGCCTATTCAATCTTGAGCTCCTTTCAGTCTCTTAATTGTGTTATGGCCAGTTTTAGAGAATTCTGTATTA
TTATGTATGATCCAGCGGGTTAACCATGGTGGTGGGGTGTTTGTGGAACAGAGGGTGGAATCTTAATACTTTGGTGCCTG
GGATTGTTGTTGGATTTGTGCAAGCTTTGGGTGCTCGTTACTCAAGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12841.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis