Browse Element(s) Details


OsAffx.31803.1.S1_at

Description tigr:9640.m01868
TID=OsAffx.31803.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1892010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g18880Os.12841.1.S1_at9/1112+10956869..10959695Mago nashi protein homolog, putative, expressed
LOC_Os12g18900Os.50823.1.S1_at10/1112+10960706..10969935cysteine desulfurase, putative, expressed
LOC_Os12g18900OsAffx.19737.1.S1_x_at9/1112+10960706..10969935cysteine desulfurase, putative, expressed
LOC_Os12g18910OsAffx.31802.2.S1_at3/1112+10972867..10975770transposon protein, putative, unclassified
LOC_Os12g18910OsAffx.31802.1.S1_at2/1112+10972867..10975770transposon protein, putative, unclassified
LOC_Os12g18920OsAffx.31803.1.S1_at10/1112+10976384..10980149expressed protein
LOC_Os12g18930NANA12+10981873..10988317retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g18940NANA12+10988501..10988821retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g18950OsAffx.20801.1.S1_at1/1112+10991839..10992405retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g18960Os.7026.2.S1_at11/1112+10996033..11001661Integral membrane protein DUF6 containing protein, expressed
LOC_Os12g18960Os.7026.1.S1_x_at11/1112+10996033..11001661Integral membrane protein DUF6 containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31803.1.S1_at--1063--5071Chr12:10977742..10977766 (25 bp)
GCACCACAGCCCTGTAGGATCATAA
LOC_Os12g18920
OsAffx.31803.1.S1_at--587--2471Chr12:10977719..10977743 (25 bp)
AACACTGGATGTTGCGTTCAATACG
LOC_Os12g18920
OsAffx.31803.1.S1_at--216--8151Chr12:10977632..10977656 (25 bp)
GGACAAGACTACCATTGCTGATGAA
LOC_Os12g18920
OsAffx.31803.1.S1_at--398--1811Chr12:10977145..10977169 (25 bp)
ACCCAGTCCCATAGTGCAGATGGTT
LOC_Os12g18920
OsAffx.31803.1.S1_at--981--51Chr12:10977076..10977100 (25 bp)
ATTGAGACTGACACCTCCATGCAAG
LOC_Os12g18920
OsAffx.31803.1.S1_at--68--5651NONE
GACACCTCCATGCAAGGTAATACTG
NONE
OsAffx.31803.1.S1_at--657--3091Chr12:10976509..10976533 (25 bp)
AATACTGCAGTTAACGTGACCACCG
LOC_Os12g18920
OsAffx.31803.1.S1_at--216--1891Chr12:10976496..10976520 (25 bp)
ACGTGACCACCGAGGGCACAAACAC
LOC_Os12g18920
OsAffx.31803.1.S1_at--832--531Chr12:10976465..10976489 (25 bp)
ATCGCCCTCTGCACATCAAAATGAT
LOC_Os12g18920
OsAffx.31803.1.S1_at--264--2091Chr12:10976453..10976477 (25 bp)
ACATCAAAATGATGGTCACCACCAT
LOC_Os12g18920
OsAffx.31803.1.S1_at--522--1711Chr12:10976436..10976460 (25 bp)
ACCACCATCATCCAGATGCAGATGT
LOC_Os12g18920
Target Sequence 
GCACCACAGCCCTGTAGGATCATAACACTGGATGTTGCGTTCAATACGACACCACAGATCACATCCACTGAACCACACCC
TCATTTACCAGGGGAGCTTTTTCCGACCATGGACAAGACTACCATTGCTGATGAAAATCAAGCCCTCACTCCTCAGCCAG
ATGCGGATTTTCAAGGTGGCTGCGATGTTGGTATTCCACTGCAAGGAATTATTGATTTTACCATGACTTCCGAGGGCACA
TGCACAACCCAGTCCCATAGTGCAGATGGTTTTGAAGGGCACCACGATCTACCAGATGTGGACGATGAACATGGCATTGA
GACTGACACCTCCATGCAAGGTAATACTGCAGTTAACGTGACCACCGAGGGCACAAACACAGCCAAATCGCCCTCTGCAC
ATCAAAATGATGGTCACCACCATCATCCAGATGCAGATGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31803.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis