Browse Element(s) Details


OsAffx.19737.1.S1_x_at

Description tigr:9640.m01865
TID=OsAffx.19737.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to AY149950 At1g08490T27G7_14
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g189009/11cysteine desulfurase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g18860Os.10568.1.S1_at11/1112+10932948..10939812expressed protein
LOC_Os12g18860Os.27155.1.S1_at1/1112+10932948..10939812expressed protein
LOC_Os12g18860OsAffx.2817.1.S1_at1/1112+10932948..10939812expressed protein
LOC_Os12g18870NANA12+10945860..10946163NA
LOC_Os12g18880Os.12841.1.S1_at9/1112+10956869..10959695Mago nashi protein homolog, putative, expressed
LOC_Os12g18900Os.50823.1.S1_at10/1112+10960706..10969935cysteine desulfurase, putative, expressed
LOC_Os12g18900OsAffx.19737.1.S1_x_at9/1112+10960706..10969935cysteine desulfurase, putative, expressed
LOC_Os12g18910OsAffx.31802.2.S1_at3/1112+10972867..10975770transposon protein, putative, unclassified
LOC_Os12g18910OsAffx.31802.1.S1_at2/1112+10972867..10975770transposon protein, putative, unclassified
LOC_Os12g18920OsAffx.31803.1.S1_at10/1112+10976384..10980149expressed protein
LOC_Os12g18930NANA12+10981873..10988317retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g18940NANA12+10988501..10988821retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g18950OsAffx.20801.1.S1_at1/1112+10991839..10992405retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
GO:0008483molecular_functiontransaminase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19737.1.S1_x_at--950--5051NONE
GCAGCAGTTCAATGCTTCCTATTGA
NONE
OsAffx.19737.1.S1_x_at--312--2831Chr12:10966879..10966903 (25 bp)
AAGTTCTTGTCGATGCTTGTCAAAG
LOC_Os12g18900
OsAffx.19737.1.S1_x_at--1016--2311Chr12:10966858..10966882 (25 bp)
AAAGTGTTCCTCATATGCCTGTCGA
LOC_Os12g18900
OsAffx.19737.1.S1_x_at--35--6551Chr12:10966814..10966838 (25 bp)
GATTTTCTTGTTGCATCATCACACA
LOC_Os12g18900
OsAffx.19737.1.S1_x_at--22--2131Chr12:10966682..10966706 (25 bp)
ACAGGCGTTGGATTCTTGCATGGAA
LOC_Os12g18900
OsAffx.19737.1.S1_x_at--622--2831Chr12:10966658..10966682 (25 bp)
AAGTTTGACCTCTTATCATCCATGG
LOC_Os12g18900
OsAffx.19737.1.S1_x_at--576--411Chr12:10966644..10966668 (25 bp)
ATCATCCATGGAGCCTTTCTTAGGT
LOC_Os12g18900
OsAffx.19737.1.S1_x_at--7--9131NONE
TGCTGAGCCTCCTTCTAGATTTGAA
NONE
OsAffx.19737.1.S1_x_at--4--6011Chr12:10965437..10965461 (25 bp)
GAGAGCCTTATTGCTGTTCCAAATG
LOC_Os12g18900
OsAffx.19737.1.S1_x_at--462--2271Chr12:10965417..10965441 (25 bp)
AAATGTTCGGATCTACGGTCCAGCT
LOC_Os12g18900
OsAffx.19737.1.S1_x_at--914--10551Chr12:10965316..10965340 (25 bp)
TTCTTGACCTCCAGGTATGCATTCT
LOC_Os12g18900
Target Sequence 
GCAGCAGTTCAATGCTTCCTATTGAGGATATTGTAACATGGTCAAACAGAATTGGTGCTAAAGTTCTTGTCGATGCTTGT
CAAAGTGTTCCTCATATGCCTGTCGATGTTCAGAGGCTTGGTGCAGATTTTCTTGTTGCATCATCACACAAGATGTGTGG
CCCTACAGGCGTTGGATTCTTGCATGGAAAGTTTGACCTCTTATCATCCATGGAGCCTTTCTTAGGTGGTGGTGAAATGA
TTGCAGATGTGTTCCAAGACAAATCCACATATGCTGAGCCTCCTTCTAGATTTGAAGCTGGAACACCTGCGATTGGAGAA
GCTATAGGATTGGGAACAGCAATTGATTATTTGTCACAAATTGGCATGCAGAAGATCCATGAGTATGAGAATGAGTTGGC
GACCTATCTCTATGAGAGCCTTATTGCTGTTCCAAATGTTCGGATCTACGGTCCAGCTCCATGCCAAACTGTTCACCGCG
CCCCATTATGTTCTTTTAATGTTGAAAATGTTCATCCAACAGATATTGCCGAAATTCTTGACCTCCAGGTATGCATTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19737.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis