Browse Element(s) Details


Os.50823.1.S1_at

Description gb:AK070909.1
DB_XREF= gi:32980932
TID=Os.50823.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50823 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023065F24, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023065F24, full insert sequence.
FL= gb:AK058791.1 gb:AK070909.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1890010/11cysteine desulfurase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g18860Os.10568.1.S1_at11/1112+10932948..10939812expressed protein
LOC_Os12g18860Os.27155.1.S1_at1/1112+10932948..10939812expressed protein
LOC_Os12g18860OsAffx.2817.1.S1_at1/1112+10932948..10939812expressed protein
LOC_Os12g18870NANA12+10945860..10946163NA
LOC_Os12g18880Os.12841.1.S1_at9/1112+10956869..10959695Mago nashi protein homolog, putative, expressed
LOC_Os12g18900Os.50823.1.S1_at10/1112+10960706..10969935cysteine desulfurase, putative, expressed
LOC_Os12g18900OsAffx.19737.1.S1_x_at9/1112+10960706..10969935cysteine desulfurase, putative, expressed
LOC_Os12g18910OsAffx.31802.2.S1_at3/1112+10972867..10975770transposon protein, putative, unclassified
LOC_Os12g18910OsAffx.31802.1.S1_at2/1112+10972867..10975770transposon protein, putative, unclassified
LOC_Os12g18920OsAffx.31803.1.S1_at10/1112+10976384..10980149expressed protein
LOC_Os12g18930NANA12+10981873..10988317retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g18940NANA12+10988501..10988821retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g18950OsAffx.20801.1.S1_at1/1112+10991839..10992405retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
GO:0008483molecular_functiontransaminase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50823.1.S1_at--290--111NONE
ATTCTTGACCTCCAGCATGGCGTGG
NONE
Os.50823.1.S1_at--58--8491Chr12:10961216..10961240 (25 bp)
TGGCGTGGCAATTCGGTCAGGCCAT
LOC_Os12g18900
Os.50823.1.S1_at--677--7111Chr12:10961201..10961225 (25 bp)
GTCAGGCCATCATTGTGCACAGATA
LOC_Os12g18900
Os.50823.1.S1_at--381--231Chr12:10961179..10961203 (25 bp)
ATATTGCATCGAACTCTTGGTATCA
LOC_Os12g18900
Os.50823.1.S1_at--526--10851Chr12:10961163..10961187 (25 bp)
TTGGTATCAATGCAAGTGCTCGTGC
LOC_Os12g18900
Os.50823.1.S1_at--51--5191Chr12:10961152..10961176 (25 bp)
GCAAGTGCTCGTGCTAGTCTTCACT
LOC_Os12g18900
Os.50823.1.S1_at--828--7311Chr12:10961142..10961166 (25 bp)
GTGCTAGTCTTCACTTCTACAATAC
LOC_Os12g18900
Os.50823.1.S1_at--446--7991Chr12:10961105..10961129 (25 bp)
GGATGTCTTTGTCGATGCGCTGAAA
LOC_Os12g18900
Os.50823.1.S1_at--762--8411Chr12:10960917..10960941 (25 bp)
GGCCTTTCTTGTAAATCAAGTCCCT
LOC_Os12g18900
Os.50823.1.S1_at--351--10351Chr12:10960715..10960739 (25 bp)
TTTTTAACACGTGATGCCTTCTGTT
LOC_Os12g18900
Os.50823.1.S1_at--449--1911Chr12:10960707..10960731 (25 bp)
ACGTGATGCCTTCTGTTTCCTGTTG
LOC_Os12g18900
Target Sequence 
ATTCTTGACCTCCAGCATGGCGTGGCAATTCGGTCAGGCCATCATTGTGCACAGATATTGCATCGAACTCTTGGTATCAA
TGCAAGTGCTCGTGCTAGTCTTCACTTCTACAATACCAAAGAGGAGGTGGATGTCTTTGTCGATGCGCTGAAAGATACTA
TTGATTTCCTTACTTCTGAACACTAGTACCACGGTTCGATTAGTATACGGCATTCTCCCTTTTTACAAGTTTCAGGTTGA
CTTTATCTAGCCAAGGGGTCATACAATTACAAAATGAAACAACCAACCAAAACATGTGTATTAGATTGCCTACTTTGGCC
TTTCTTGTAAATCAAGTCCCTTTTTCTCCCATCCCTGAAATTTTGCAGAAGCTGAATTTGTACAACAGAATAATTTAAGT
GTTGCAGCAAGCTGTGAGAAAGCTCATGACNTTGAAGGTTTATTTGTAAATTATGCTGACCTGTATGTTCTCTTCGTTGA
AAATCATAAACAAGGTTACACAAGCATAAACAAGTTTTTTTTTAACACGTGATGCCTTCTGTTTCCTGTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50823.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis