Browse Element(s) Details


Os.7026.2.S1_at

Description gb:AK100993.1
DB_XREF= gi:32986202
TID=Os.7026.2
CNT=4
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.7026 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023146F15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023146F15, full insert sequence.
FL= gb:AK100993.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1896011/11Integral membrane protein DUF6 containing protein, expressed
LOC_Os05g163201/11hypothetical protein
LOC_Os11g312501/11hypothetical protein
LOC_Os11g244841/11oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g18910OsAffx.31802.2.S1_at3/1112+10972867..10975770transposon protein, putative, unclassified
LOC_Os12g18910OsAffx.31802.1.S1_at2/1112+10972867..10975770transposon protein, putative, unclassified
LOC_Os12g18920OsAffx.31803.1.S1_at10/1112+10976384..10980149expressed protein
LOC_Os12g18930NANA12+10981873..10988317retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g18940NANA12+10988501..10988821retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g18950OsAffx.20801.1.S1_at1/1112+10991839..10992405retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g18960Os.7026.2.S1_at11/1112+10996033..11001661Integral membrane protein DUF6 containing protein, expressed
LOC_Os12g18960Os.7026.1.S1_x_at11/1112+10996033..11001661Integral membrane protein DUF6 containing protein, expressed
LOC_Os12g18970OsAffx.13838.1.S1_at1/1112+11007853..11009024Transposable element protein, putative, Retrotrans_gag
LOC_Os12g18970OsAffx.16344.1.S1_at1/1112+11007853..11009024Transposable element protein, putative, Retrotrans_gag
LOC_Os12g18970OsAffx.26058.1.S1_at1/1112+11007853..11009024Transposable element protein, putative, Retrotrans_gag
LOC_Os12g18980NANA12+11013110..11013619retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g18990NANA12+11020707..11021345retrotransposon protein, putative, unclassified
LOC_Os12g19000NANA12+11023499..11029196retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0007568biological_processaging
GO:0042335biological_processcuticle biosynthesis
GO:0016020cellular_componentmembrane
GO:0004022molecular_functionalcohol dehydrogenase activity
GO:0016491molecular_functionoxidoreductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7026.2.S1_at--230--6951Chr12:10996486..10996510 (25 bp)
GTAGTTTAGCCATTTCTCTTTGCAT
LOC_Os12g18960
Os.7026.2.S1_at--953--2234Chr12:10996433..10996457 (25 bp)
AAATAGGAAGCGTTATCACCTCCCG
LOC_Os12g18960
Os.7026.2.S1_at--76--7991Chr12:10996409..10996433 (25 bp)
GGATGAGGCCACACGTACATTTATA
LOC_Os12g18960
Os.7026.2.S1_at--632--8971Chr12:10996373..10996397 (25 bp)
TGAAAACAGCCTTTCACCGTGGCAG
LOC_Os12g18960
Os.7026.2.S1_at--1043--9671Chr12:10996360..10996384 (25 bp)
TCACCGTGGCAGTACATAGATCAAT
LOC_Os12g18960
Os.7026.2.S1_at--938--6451Chr12:10996342..10996366 (25 bp)
GATCAATCCATTGTATACCGGTATA
LOC_Os12g18960
Os.7026.2.S1_at--706--2991Chr12:10996307..10996331 (25 bp)
AATGATAACCAACTCCTCTATCCTC
LOC_Os12g18960
Os.7026.2.S1_at--546--751Chr12:10996176..10996200 (25 bp)
ATGTACTACATCTCTTGCGATCTAC
LOC_Os12g18960
Os.7026.2.S1_at--503--3751Chr12:10996165..10996189 (25 bp)
CTCTTGCGATCTACATTCACTACTA
LOC_Os12g18960
Os.7026.2.S1_at--512--83914Chr11:17726038..17726118 (25 bp)
GGCCCAAAACCATTTTCGCAGGCGG
LOC_Os11g31250
Os.7026.2.S1_at--644--7551Chr12:10996035..10996059 (25 bp)
GTGGCCTGCCTGCAAAAATCATCTT
LOC_Os12g18960
Target Sequence 
GTAGTTTAGCCATTTCTCTTTGCATACATGGAAGGTAAGTACTATATATGGCGAAATAGGAAGCGTTATCACCTCCCGGA
TGAGGCCACACGTACATTTATATTAATATGACGTGAAAACAGCCTTTCACCGTGGCAGTACATAGATCAATCCATTGTAT
ACCGGTATAGATCACATAAAATGATAACCAACTCCTCTATCCTCTACTTTTCTGTTACAAAGAGATAAACCCTGACATAT
ATATCTAACAAGTATGCCAAGATGGTGGTATGAAAATGGGAGATGGAATTTTTGTTAATTTGAAAGAAAAATGTACTACA
TCTCTTGCGATCTACATTCACTACTAGAAAAATGATTTTTCCAGGCGGCCCAAAACCATTTTCGCAGGCGGGGAGGAGGA
CCGCNGCTAACACGTCAACTGTGAAAAAAGACCATTTTCGCAACTGGGCCCGTGGCCTGCCTGCAAAAATCATCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7026.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis