Browse Element(s) Details


Os.10572.1.S1_at

Description gb:AK109389.2
DB_XREF= gi:42821704
TID=Os.10572.1
CNT=50
FEA=FLmRNA
TIER=FL+Stack
STK=6
UG=Os.10572 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-211-F02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-211-F02, full insert sequence.
FL= gb:AK109389.2
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5936011/11Remorin, C-terminal region family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g59300Os.4980.1.S1_at11/113+33704394..33706711expressed protein
LOC_Os03g59310Os.11049.1.S1_at11/113+33707952..3370985640S ribosomal protein S2, putative, expressed
LOC_Os03g59320Os.10146.1.S1_at11/113+33710690..33712549expressed protein
LOC_Os03g59330OsAffx.25765.1.S1_at11/113+33716444..33719478Polygalacturonase family protein, expressed
LOC_Os03g59340Os.14979.1.S1_at11/113+33718947..33725306Cellulose synthase A catalytic subunit 3, putative, expressed
LOC_Os03g59340Os.14979.1.S2_at11/113+33718947..33725306Cellulose synthase A catalytic subunit 3, putative, expressed
LOC_Os03g59350OsAffx.13550.1.S1_s_at11/113+33726843..33728494UDP-glucose:flavonoid-O-glucosyltransferase, putative, expressed
LOC_Os03g59360Os.10572.1.S1_at11/113+33729890..33731707Remorin, C-terminal region family protein, expressed
LOC_Os03g59370OsAffx.25766.1.S1_at11/113+33735723..33736800Ubiquitin family protein
LOC_Os03g59380OsAffx.25767.1.S1_s_at10/113+33737883..33738699Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os03g59390Os.5004.1.S1_at10/113+33744763..33749033Calcium-dependent protein kinase, isoform AK1, putative, expressed
LOC_Os03g59400OsAffx.13551.1.S1_at10/113+33750953..33751357hypothetical protein
LOC_Os03g59410NANA3+33756437..33762591retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10572.1.S1_at--947--5931Chr03:33730921..33730945 (25 bp)
GAGCAGGTCGAGAAAGCATCCGCAT
LOC_Os03g59360
Os.10572.1.S1_at--589--2711Chr03:33730908..33730932 (25 bp)
AAGCATCCGCATGGCTCAAGAAGAT
LOC_Os03g59360
Os.10572.1.S1_at--490--8031Chr03:33730227..33730251 (25 bp)
GGAGGGTGCCTACCAAGCGATCCTT
LOC_Os03g59360
Os.10572.1.S1_at--522--3771Chr03:33730180..33730204 (25 bp)
CTCTGCAAACCTTCGATCTTGATCG
LOC_Os03g59360
Os.10572.1.S1_at--514--10571Chr03:33730138..33730162 (25 bp)
TTCTTTCAGTGCCTTTTGTGTGCTG
LOC_Os03g59360
Os.10572.1.S1_at--763--8571Chr03:33730115..33730139 (25 bp)
TGGATTAATCTAGCTGCCGTTCTTC
LOC_Os03g59360
Os.10572.1.S1_at--1075--4231Chr03:33730099..33730123 (25 bp)
CCGTTCTTCGTGTGATGTTTGCTTA
LOC_Os03g59360
Os.10572.1.S1_at--161--751Chr03:33730085..33730109 (25 bp)
ATGTTTGCTTAGCTGTGCGCATCCG
LOC_Os03g59360
Os.10572.1.S1_at--566--7271Chr03:33730071..33730095 (25 bp)
GTGCGCATCCGAGAACCTAATTGTA
LOC_Os03g59360
Os.10572.1.S1_at--1074--10811Chr03:33729990..33730014 (25 bp)
TTGTGATCACAGAGTGGCCCTTGTT
LOC_Os03g59360
Os.10572.1.S1_at--669--10391Chr03:33729966..33729990 (25 bp)
TTTTCCCCTGGCTTGTATTATCCAT
LOC_Os03g59360
Target Sequence 
GAGCAGGTCGAGAAAGCATCCGCATGGCTCAAGAAGATCGAGAGAAAGCTGGACGAGCAGCGCGCCAAGGCGCTGGAGAG
GACGCAGAACGACATCGCGAAGGCGCGGCGCAAGGCGGAGGAGAAGAGGGCGTCGGCGGAGGCGAAGAGAGGCCTCAAGC
TCGCCAAGGTGCTCGAGCTCGCCAACTTCATGAAGGCTGTTGGGAGGGTGCCTACCAAGCGATCCTTCTTCTAGCTTCCT
GCAGCCAGCCTCTGCAAACCTTCGATCTTGATCGATCTGCTGCTGCTCTGTTTCTTTCAGTGCCTTTTGTGTGCTGGATT
AATCTAGCTGCCGTTCTTCGTGTGATGTTTGCTTAGCTGTGCGCATCCGAGAACCTAATTGTAAAAAAGATTTTAAAACA
AGTTGTATATTTGCTGTTGCTGCTGTTGCCCTCTGCTGCTTGTGATCACAGAGTGGCCCTTGTTTTTCCCCTGGCTTGTA
TTATCCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10572.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis