Browse Element(s) Details


Os.10578.1.A1_at

Description gb:CF280794
DB_XREF= gi:33658180
DB_XREF=14ETL--07-J17.g1
CLONE=14ETL--07-J17
TID=Os.10578.1
CNT=8
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.10578 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_187685.1 (A.thaliana) putative alpha-L-arabinofuranosidase (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2042011/11Alpha-L-arabinofuranosidase C-terminus family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g20380Os.12261.1.S1_a_at11/113+11505106..11510816CIPK-like protein 1, putative, expressed
LOC_Os03g20380Os.39470.1.A1_x_at1/113+11505106..11510816CIPK-like protein 1, putative, expressed
LOC_Os03g20390OsAffx.25164.1.S1_at11/113+11520292..11520716hypothetical protein
LOC_Os03g20400OsAffx.25165.1.S1_at10/113+11521834..11522300hypothetical protein
LOC_Os03g20400OsAffx.8723.1.S1_at1/113+11521834..11522300hypothetical protein
LOC_Os03g20410Os.53172.1.S1_at11/113+11525413..11527917aquaporin SIP2.1, putative, expressed
LOC_Os03g20420Os.10578.1.A1_at11/113+11528342..11537173Alpha-L-arabinofuranosidase C-terminus family protein, expressed
LOC_Os03g20420Os.53962.1.S1_at1/113+11528342..11537173Alpha-L-arabinofuranosidase C-terminus family protein, expressed
LOC_Os03g20430Os.53895.1.S1_at11/113+11538995..11541397Pre-SET motif family protein, expressed
LOC_Os03g20440Os.18622.1.S1_at11/113+11547303..11548353VQ motif family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016798molecular_functionhydrolase activity, acting on glycosyl bonds
GO:0046556molecular_functionalpha-N-arabinofuranosidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10578.1.A1_at--846--7711Chr03:11528866..11528890 (25 bp)
GGGTGTCATTGTGGATCCATACTCC
LOC_Os03g20420
Os.10578.1.A1_at--559--311Chr03:11528800..11528824 (25 bp)
ATACCCACTATTGGAGTCGAGCTTT
LOC_Os03g20420
Os.10578.1.A1_at--831--2391Chr03:11528686..11528710 (25 bp)
AAACTACAGATACTGCTCGCCTGTC
LOC_Os03g20420
Os.10578.1.A1_at--12--8791Chr03:11528625..11528649 (25 bp)
TGTTATCATGTATTCACCGTCTCCG
LOC_Os03g20420
Os.10578.1.A1_at--440--7151Chr03:11528607..11528631 (25 bp)
GTCTCCGGGCCTATGAGCATTGTCT
LOC_Os03g20420
Os.10578.1.A1_at--1133--4931Chr03:11528591..11528615 (25 bp)
GCATTGTCTCATTGCGTGAATTGCT
LOC_Os03g20420
Os.10578.1.A1_at--1128--10171Chr03:11528551..11528575 (25 bp)
TATACCTGTAACATCACGCTCAAGC
LOC_Os03g20420
Os.10578.1.A1_at--71--391Chr03:11528539..11528563 (25 bp)
ATCACGCTCAAGCATCCGTTGTAGT
LOC_Os03g20420
Os.10578.1.A1_at--585--1931Chr03:11528458..11528482 (25 bp)
ACGGAATCTTTTTGTTGCCCTGTCT
LOC_Os03g20420
Os.10578.1.A1_at--290--211Chr03:11528392..11528416 (25 bp)
ATATTTTCGCTCTGTACTTTACACG
LOC_Os03g20420
Os.10578.1.A1_at--279--2171Chr03:11528372..11528396 (25 bp)
ACACGTTGGTTCCTTTTGTATGTGA
LOC_Os03g20420
Target Sequence 
GGGTGTCATTGTGGATCCATACTCCCTCACCTCGTTTGATCTCCTCCTGGACACCNACACAGACANAATACCCACTATTG
GAGTCGAGCTTTCATTCAAGCATGTGAATACAGCGCGAAATGTAATGGCATAGACATTAGGGGAATTCCCGTGTGGGAAA
TCCAAATTTGTGAATAAGTATAAACTACAGATACTGCTCGCCTGTCTGCAGAAGCAGTGAAAGTCCTGGTATTTGTTGTG
TATGTTATCATGTATTCACCGTCTCCGGGCCTATGAGCATTGTCTCATTGCGTGAATTGCTGAGANACAACTTTAATATA
CCTGTAACATCACGCTCAAGCATCCGTTGTAGTNTANNTGGTTAGGATACTCGGCTCTCACCCGAGAGACCCGGGTTCAA
AAAACGGCAACGGAATCTTTTTGTTGCCCTGTCTTTTTAAGAATGTAAACATTGGTTCCTTTTGTTTTGTACTATATATT
TTCGCTCTGTACTTTACACGTTGGTTCCTTTTGTATGTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10578.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis