Browse Element(s) Details


Os.10598.1.S1_at

Description gb:AK066766.1
DB_XREF= gi:32976784
TID=Os.10598.1
CNT=39
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.10598 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013088L06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013088L06, full insert sequence.
FL= gb:AK066766.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g4431010/119,10-9',10' carotenoid cleavage dioxygenase 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g44250OsAffx.32186.1.S1_at11/1112+27405565..27407849Synaptobrevin family protein, expressed
LOC_Os12g44250OsAffx.1407.1.S1_at3/1112+27405565..27407849Synaptobrevin family protein, expressed
LOC_Os12g44250Os.55414.1.S1_at2/1112+27405565..27407849Synaptobrevin family protein, expressed
LOC_Os12g44260OsAffx.20114.1.S1_x_at11/1112+27408160..27408829DnaJ domain containing protein
LOC_Os12g44260OsAffx.20114.1.S1_at11/1112+27408160..27408829DnaJ domain containing protein
LOC_Os12g44270OsAffx.7886.1.S1_at11/1112+27410275..27410646hypothetical protein
LOC_Os12g44280NANA12+27413047..27413997hypothetical protein
LOC_Os12g44290OsAffx.20116.1.S1_at11/1112+27417687..27419435Cytochrome P450 family protein, expressed
LOC_Os12g44300OsAffx.32187.1.S1_s_at11/1112+27428036..27430667Sodium/hydrogen exchanger family protein, expressed
LOC_Os12g44300Os.10071.1.S1_at6/1112+27428036..27430667Sodium/hydrogen exchanger family protein, expressed
LOC_Os12g44310Os.10598.1.S1_at10/1112+27431232..274384309,10-9',10' carotenoid cleavage dioxygenase 1, putative, expressed
LOC_Os12g44320OsAffx.20117.1.S1_s_at11/1112+27440868..27443689D-mannose binding lectin family protein, expressed
LOC_Os12g44320Os.55718.1.S1_x_at11/1112+27440868..27443689D-mannose binding lectin family protein, expressed
LOC_Os12g44320Os.55718.1.S1_at11/1112+27440868..27443689D-mannose binding lectin family protein, expressed
LOC_Os12g44330Os.17376.2.S1_at11/1112+27446516..27452843Protein kinase domain containing protein, expressed
LOC_Os12g44330Os.17376.2.S1_x_at11/1112+27446516..27452843Protein kinase domain containing protein, expressed
LOC_Os12g44340Os.26364.1.S1_at11/1112+27453510..27457977expressed protein
LOC_Os12g44350Os.6379.1.S1_at1/1112+27458264..27459555Actin-1, putative, expressed
LOC_Os12g44360Os.53872.1.S1_at11/1112+27462128..27474827Plasma membrane Na+/H+ antiporter, putative, expressed
LOC_Os12g44360Os.7094.1.S1_a_at11/1112+27462128..27474827Plasma membrane Na+/H+ antiporter, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009414biological_processresponse to water deprivation
GO:0009688biological_processabscisic acid biosynthesis
GO:0016118biological_processcarotenoid catabolism
GO:0042538biological_processhyperosmotic salinity response
GO:0009535cellular_componentthylakoid membrane (sensu Viridiplantae)
GO:0009570cellular_componentchloroplast stroma
GO:0009579cellular_componentthylakoid
GO:0045549molecular_function9-cis-epoxycarotenoid dioxygenase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10598.1.S1_at--280--8211Chr12:27437297..27437321 (25 bp)
GGAATATTTGACTTGGGACCTGGTA
LOC_Os12g44310
Os.10598.1.S1_at--857--7831Chr12:27437318..27437342 (25 bp)
GGTAGATTCGGGTCCGAGGCAATTT
LOC_Os12g44310
Os.10598.1.S1_at--644--8151Chr12:27437353..27437377 (25 bp)
GGAACCCGGTGTATCTGGAGAAGAA
LOC_Os12g44310
Os.10598.1.S1_at--1033--10251Chr12:27437389..27437413 (25 bp)
TTTGATATTCTTTGTCCACGACGAG
LOC_Os12g44310
Os.10598.1.S1_at--219--8511Chr12:27437628..27437652 (25 bp)
TGGCAGTTGTTGAGCTACCAAGCCG
LOC_Os12g44310
Os.10598.1.S1_at--292--9831Chr12:27437643..27437667 (25 bp)
TACCAAGCCGAGTTCCCTACGGATT
LOC_Os12g44310
Os.10598.1.S1_at--700--3711Chr12:27437659..27437683 (25 bp)
CTACGGATTCCATGCTTTCTTTATA
LOC_Os12g44310
Os.10598.1.S1_at--592--1631Chr12:27437886..27437910 (25 bp)
AGCGGACTGCATACATCCTACAGTA
LOC_Os12g44310
Os.10598.1.S1_at--838--10412Chr12:27438061..27438085 (25 bp)
TTATTATATATCTCTGTGTGTGTGC
LOC_Os12g44310
Os.10598.1.S1_at--787--5091Chr12:27438110..27438135 (25 bp)
GCACGCATGAGGAGCATTAACGAAT
LOC_Os12g44310
Os.10598.1.S1_at--412--5232Chr10:13200684..13200761 (25 bp)
GAATATATTCTCTCCATCCCAAATA
NONE
Target Sequence 
GGAATATTTGACTTGGGACCTGGTAGATTCGGGTCCGAGGCAATTTTTGTGCCTANGGAACCCGGTGTATCTGGAGAAGA
AGATGATGGTTATTTGATATTCTTTGTCCACGACGAGAATACAGGGAAATCTGAAGTCAATGTGATTGATGCAAAGACAA
TGTCTGCTGANCCGGTGGCAGTTGTTGAGCTACCAAGCCGAGTTCCCTACGGATTCCATGCTTTCTTTATAAACGAGGAA
CAACTGGCAAAACAATCAGCGTGACAAGTGANAGCGGACTGCATACATCCTACAGTAACTTGTTATATTTTAGTCGGAGG
GAAATGATATATACATATGAATGTACATGTGTATCCTCTTACTCGGGGAAATAATTGGCTTAAGGTACATATATGTTTAA
CTCGAATTGAACAATTACTCCTATATTAATTACTTATTAAGGGAGGGTTATTATATATCTCTGTGTGTGTGCGTCATCGG
GAGTAGTAGTGTATATGCACGCATGAGGAGCATTAACGAATATATTCTCTCCATCCCAAATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10598.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis