Browse Element(s) Details


Os.10644.1.S1_at

Description gb:AK066902.1
DB_XREF= gi:32976920
TID=Os.10644.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.10644 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013092B20, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013092B20, full insert sequence.
FL= gb:AK066902.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g2726410/11Serine carboxypeptidase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g27210OsAffx.380.1.S1_at1/1111+15158597..15164720retrotransposon protein, putative, unclassified
LOC_Os11g27210OsAffx.25972.1.S1_at1/1111+15158597..15164720retrotransposon protein, putative, unclassified
LOC_Os11g27220OsAffx.31158.1.S1_at2/1111+15165446..15166625hypothetical protein
LOC_Os11g27240Os.54866.1.S1_at11/1111+15167385..15170454pentatricopeptide, putative, expressed
LOC_Os11g27250Os.49957.1.S1_at11/1111+15172412..15179933expressed protein
LOC_Os11g27250OsAffx.31159.1.S1_at10/1111+15172412..15179933expressed protein
LOC_Os11g27250OsAffx.29095.1.S1_at1/1111+15172412..15179933expressed protein
LOC_Os11g27250Os.34903.1.S1_at1/1111+15172412..15179933expressed protein
LOC_Os11g27264Os.10644.1.S1_at10/1111+15182780..15194588Serine carboxypeptidase family protein, expressed
LOC_Os11g27264OsAffx.9287.1.S1_at1/1111+15182780..15194588Serine carboxypeptidase family protein, expressed
LOC_Os11g27280Os.47463.1.S1_x_at1/1111+15195727..15196388transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g27280Os.14491.2.S1_x_at1/1111+15195727..15196388transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g27290NANA11+15196799..15198358transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g27300NANA11+15201011..15201391hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0019748biological_processsecondary metabolism
GO:0004185molecular_functionserine carboxypeptidase activity
GO:0016752molecular_functionsinapoyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10644.1.S1_at--430--6951Chr11:15192166..15192309 (25 bp)
GTAGAAAAGCTTCCCACGTGTTATT
LOC_Os11g27264
Os.10644.1.S1_at--222--2231Chr11:15192534..15192558 (25 bp)
ACAATAGCGATGTCCGTAGTACAGT
LOC_Os11g27264
Os.10644.1.S1_at--932--2871Chr11:15192584..15192608 (25 bp)
AAGGGATACCGAGCAATCATATACA
LOC_Os11g27264
Os.10644.1.S1_at--1146--6551Chr11:15192907..15192931 (25 bp)
GATTCTAGAGTTCCCTCCATTAGCA
LOC_Os11g27264
Os.10644.1.S1_at--1085--6551Chr11:15192947..15192971 (25 bp)
GATTACTTAACCTTTCTATTGCTGA
LOC_Os11g27264
Os.10644.1.S1_at--144--71Chr11:15192964..15192988 (25 bp)
ATTGCTGATGATTGGCGACCGTGGT
LOC_Os11g27264
Os.10644.1.S1_at--66--5831Chr11:15192980..15193004 (25 bp)
GACCGTGGTACGTTGATGGACAAGT
LOC_Os11g27264
Os.10644.1.S1_at--1133--1191NONE
AGTTGCCGGATTCACACGAAGCTTT
NONE
Os.10644.1.S1_at--278--5391Chr11:15194078..15194102 (25 bp)
GAAGCTTTGCGAGTAATAACCTGAC
LOC_Os11g27264
Os.10644.1.S1_at--375--5111Chr11:15194344..15194368 (25 bp)
GCACTCCTCTCTGACGTATATTGTT
LOC_Os11g27264
Os.10644.1.S1_at--146--9751Chr11:15194436..15194460 (25 bp)
TAATTACTCCGTTCGGGCTGATAAT
LOC_Os11g27264
Target Sequence 
GTAGAAAAGCTTCCCACGTGTTATTAAAAATATGGGCAAATGATGAAACAGTAAGGGAGAGTCTTGGTGTGCAAAAGGGA
ACAGTTGGAGAGTGGAAACGATGCAATCGCGATATAGATTACAATAGCGATGTCCGTAGTACAGTGGAATATCATTTGAC
GCTAATGAGAAAGGGATACCGAGCAATCATATACAGCGGTGATCATGATTCTAGAGTTCCCTCCATTAGCACACAAGCAT
GGATTAGATTACTTAACCTTTCTATTGCTGATGATTGGCGACCGTGGTACGTTGATGGACAAGTTGCCGGATTCACACGA
AGCTTTGCGAGTAATAACCTGACATACGCAACTGTGAAGGGCGCTGGGCATACTGCTGCAGAGTATAAACCCAAGGAGTG
TCAAGAGATGTTTGCAAGATGGATTTCAGGCACTCCTCTCTGACGTATATTGTTCAAGTCACCTGTAAAAACATAATCAA
ACGATCATATGAGAGGTAAAATAAAGATTTGCTGCTTGTAATAATTACTCCGTTCGGGCTGATAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10644.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis