Browse Element(s) Details


Os.10652.1.S1_at

Description gb:U72942.2
DB_XREF= gi:4376183
GEN=RPI
TID=Os.10652.1
CNT=41
FEA=FLmRNA
TIER=FL+Stack
STK=21
UG=Os.10652 (NCBI UniGene Cluster)
DEF=Oryza sativa proteinase inhibitor (RPI) mRNA, complete cds.
PROD=proteinase inhibitor
FL= gb:U72942.2 gb:AK120826.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0381011/11Gamma-thionin homolog PPT precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g03790Os.49527.1.S1_at11/113+1684396..1686679acyl-activating enzyme 11, putative, expressed
LOC_Os03g03800NANA3+1689651..1691275hypothetical protein
LOC_Os03g03810Os.10652.1.S1_at11/113+1692927..1693542Gamma-thionin homolog PPT precursor, putative, expressed
LOC_Os03g03820Os.4338.1.S1_at11/113+1694780..1698023Adenylate kinase, chloroplast precursor, putative, expressed
LOC_Os03g03830Os.4339.1.S1_at10/113+1698415..1706250EF hand family protein, expressed
LOC_Os03g03840NANA3+1708856..1709056hypothetical protein
LOC_Os03g03850OsAffx.24956.1.S1_at11/113+1711641..1712456GATA zinc finger family protein
LOC_Os03g03860Os.50118.1.S1_at11/113+1715643..1727032expressed protein
LOC_Os03g03860Os.50118.2.S1_x_at11/113+1715643..1727032expressed protein
LOC_Os03g03860Os.50118.1.S1_a_at11/113+1715643..1727032expressed protein
LOC_Os03g03860Os.5378.2.S1_x_at9/113+1715643..1727032expressed protein
LOC_Os03g03860Os.5378.2.S1_at9/113+1715643..1727032expressed protein
LOC_Os03g03860Os.30136.1.S1_at2/113+1715643..1727032expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0030414molecular_functionprotease inhibitor activity
Probe Info

Probe NameHit(s)LocationSequenceTIGR Locus
Os.10652.1.S1_at--539--10511Chr03:1692967..1692991 (25 bp)
TTCACGCAAGGTGTTCTCGGCCATG
LOC_Os03g03810
Os.10652.1.S1_at--449--3351Chr03:1692969..1692993 (25 bp)
CACGCAAGGTGTTCTCGGCCATGCT
LOC_Os03g03810
Os.10652.1.S1_at--700--7751Chr03:1692976..1693000 (25 bp)
GGTGTTCTCGGCCATGCTTCTCATG
LOC_Os03g03810
Os.10652.1.S1_at--181--7431Chr03:1692977..1693001 (25 bp)
GTGTTCTCGGCCATGCTTCTCATGG
LOC_Os03g03810
Os.10652.1.S1_at--145--7791Chr03:1693000..1693024 (25 bp)
GGTGCTGCTGCTTGCAGCCACTGGT
LOC_Os03g03810
Os.10652.1.S1_at--1128--9091Chr03:1693002..1693024 (23 bp)
TGCTGCTGCTTGCAGCCACTGGTGA
LOC_Os03g03810
Os.10652.1.S1_at--36--4371Chr03:1693017..1693121 (25 bp)
CCACTGGTGAGATGGGCGGGCCGGT
LOC_Os03g03810
Os.10652.1.S1_at--616--6211Chr03:1693132..1693156 (25 bp)
GAGGCTCGGACGTGCGAGTCGCAGA
LOC_Os03g03810
Os.10652.1.S1_at--717--3991Chr03:1693142..1693166 (25 bp)
CGTGCGAGTCGCAGAGCCACCGGTT
LOC_Os03g03810
Os.10652.1.S1_at--1104--4611Chr03:1693145..1693169 (25 bp)
GCGAGTCGCAGAGCCACCGGTTCAA
LOC_Os03g03810
Os.10652.1.S1_at--164--5751Chr03:1693228..1693252 (25 bp)
GACGGCTACTGCCACGGCGTCCGCC
LOC_Os03g03810
Target Sequence
TTCACGCAAGGTGTTCTCGGCCATGCTTCTCATGGTGCTGCTGCTTGCAGCCACTGGTGAGATGGGCGGGCCGGTGATGG
TGGCGGAGGCTCGGACGTGCGAGTCGCAGAGCCACCGGTTCAAGGGCCCGTGCGCCCGCAAGGCGAACTGCGCCAGCGTA
TGCAACACGGAGGGCTTCCCCGACGGCTACTGCCACGGCGTCCGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10652.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis