Browse Element(s) Details


Os.10656.1.S1_at

Description gb:AK064157.1
DB_XREF= gi:32974175
TID=Os.10656.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.10656 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-103-F05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-103-F05, full insert sequence.
FL= gb:AK064157.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0937011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g09360Os.9147.1.S1_s_at11/115+5216276..5228055glycine-rich protein, putative, expressed
LOC_Os05g09370Os.52103.1.S1_at11/115+5232274..5240161expressed protein
LOC_Os05g09370Os.10656.1.S1_at11/115+5232274..5240161expressed protein
LOC_Os05g09380Os.6365.1.S1_at11/115+5245044..5248797actin binding protein family, putative, expressed
LOC_Os05g09389OsAffx.14261.2.S1_at11/115+5252219..5253360Transposable element protein, putative, rve
LOC_Os05g09389OsAffx.14261.4.S1_x_at1/115+5252219..5253360Transposable element protein, putative, rve
LOC_Os05g09400Os.7914.2.S1_at11/115+5253550..5257112expressed protein
LOC_Os05g09400OsAffx.26384.8.S1_x_at11/115+5253550..5257112expressed protein
LOC_Os05g09400Os.7914.1.S1_at10/115+5253550..5257112expressed protein
LOC_Os05g09400Os.46102.1.S1_at10/115+5253550..5257112expressed protein
LOC_Os05g09410OsAffx.4286.1.S1_at11/115+5257925..5259624Histidine-containing phosphotransfer protein 4, putative

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Gene Ontology Classification
GO idTypeName
GO:0008152biological_processmetabolism
GO:0016301molecular_functionkinase activity
GO:0016491molecular_functionoxidoreductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10656.1.S1_at--221--1191Chr05:5232958..5232982 (25 bp)
AGTATCTGCCTCAGTGGTTAGCCTC
LOC_Os05g09370
Os.10656.1.S1_at--613--6771Chr05:5232942..5232966 (25 bp)
GTTAGCCTCACAGGTGCTGGTGATT
LOC_Os05g09370
Os.10656.1.S1_at--433--8031Chr05:5232906..5232930 (25 bp)
GGAGTCATTTCAGCTCTATGTGGAG
LOC_Os05g09370
Os.10656.1.S1_at--642--9771Chr05:5232802..5232826 (25 bp)
TAAGTTTTCTGCTGCAACTATCGCA
LOC_Os05g09370
Os.10656.1.S1_at--954--7111Chr05:5232579..5232603 (25 bp)
GTCTTGGTGGGCATGTAATTTCCTA
LOC_Os05g09370
Os.10656.1.S1_at--965--3091Chr05:5232555..5232579 (25 bp)
AATACCGTTTGTTGATTAGGCTATA
LOC_Os05g09370
Os.10656.1.S1_at--721--971Chr05:5232455..5232479 (25 bp)
AGGAGCACGGCAGGTTTCTAAATTT
LOC_Os05g09370
Os.10656.1.S1_at--123--6472Chr07:8650489..8650509 (21 bp)
GATAATGTCACATCAGCGTCACGTA
NONE
Os.10656.1.S1_at--988--391Chr05:5232345..5232369 (25 bp)
ATCAGCGTCACGTAGGATCTCGAAA
LOC_Os05g09370
Os.10656.1.S1_at--989--5511Chr05:5232324..5232348 (25 bp)
GAAAATGGTCGTGGCAATCTTGAAC
LOC_Os05g09370
Os.10656.1.S1_at--438--9891Chr05:5232279..5232303 (25 bp)
TACTAGGAGTTCTGGTGGATATCAC
LOC_Os05g09370
Target Sequence 
AGTATCTGCCTCAGTGGTTAGCCTCACAGGTGCTGGTGATTGTTTTGTTGGTGGAGTCATTTCAGCTCTATGTGGAGGTT
TGGGTATGATGCAATCTGTTGCGGTTGGGATTGCTATAGCAAAATCATCAGTGGAATCTGAAGCTAATATACCTGATAAG
TTTTCTGCTGCAACTATCGCAGATGATGCAAGAAGAACATTGCTATCAGCNTAAAATGATGTGGTGCAAATAACCATTGG
TGTTATCTCNTGAAAGTCTTGGTGGGCATGTAATTTCCTAATACCGTTTGTTGATTAGGCTATATATATATATATAAGGC
TGAGTGTGGATTCAGGTCGTGGGCTGGTGACAACTTAGCAAGTTTAATGTAGTAGATTAAGGAGCACGGCAGGTTTCTAA
ATTTGNTTGCATGTACCTATGCCTTTATACTTNNTCAGTTTCTGTAGGCTAGTGATGATGCCACGNTTGCATCTGTATGA
TAATGTCACATCAGCGTCACGTAGGATCTCGAAAATGGTCGTGGCAATCTTGAACCAGAATGATATATTTTGTGGTACTA
GGAGTTCTGGTGGATATCAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10656.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis