Browse Element(s) Details


Os.9147.1.S1_s_at

Description gb:CB621308
DB_XREF= gi:29616296
DB_XREF=OSIIEa07B12.r
CLONE=OSIIEa07B12
TID=Os.9147.1
CNT=7
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.9147 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein pir:T48529 (A.thaliana) T48529 hypothetical protein T22P22.90 - Arabidopsis thaliana
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0936011/11glycine-rich protein, putative, expressed
LOC_Os04g589701/11Uncharacterized ACR, YggU family COG1872 containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g09330OsAffx.32056.1.S1_x_at11/115+5186530..5194036transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g09330OsAffx.32056.1.S1_at11/115+5186530..5194036transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g09330OsAffx.12420.1.S1_at1/115+5186530..5194036transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g09340OsAffx.10637.3.S1_s_at11/115+5195672..5199358transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g09340OsAffx.10637.1.S1_s_at11/115+5195672..5199358transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g09340OsAffx.10637.4.S1_s_at8/115+5195672..5199358transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g09350OsAffx.26797.1.S1_at10/115+5205268..5205982hypothetical protein
LOC_Os05g09360Os.9147.1.S1_s_at11/115+5216276..5228055glycine-rich protein, putative, expressed
LOC_Os05g09370Os.52103.1.S1_at11/115+5232274..5240161expressed protein
LOC_Os05g09370Os.10656.1.S1_at11/115+5232274..5240161expressed protein
LOC_Os05g09380Os.6365.1.S1_at11/115+5245044..5248797actin binding protein family, putative, expressed
LOC_Os05g09389OsAffx.14261.2.S1_at11/115+5252219..5253360Transposable element protein, putative, rve
LOC_Os05g09389OsAffx.14261.4.S1_x_at1/115+5252219..5253360Transposable element protein, putative, rve

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9147.1.S1_s_at--1074--8451Chr05:5227340..5227364 (25 bp)
TGGCCTTTGCGTGTGGACTTGTGCA
LOC_Os05g09360
Os.9147.1.S1_s_at--617--7331Chr05:5227360..5227384 (25 bp)
GTGCATTACAAGTCTTCAGCCAAAA
LOC_Os05g09360
Os.9147.1.S1_s_at--209--6471Chr05:5227538..5227562 (25 bp)
GATACTAGCTGGTGGCTGTTCCCAA
LOC_Os05g09360
Os.9147.1.S1_s_at--10--4711Chr05:5227552..5227576 (25 bp)
GCTGTTCCCAACAGGACTTGTGTTA
LOC_Os05g09360
Os.9147.1.S1_s_at--601--7211Chr05:5227601..5227625 (25 bp)
GTCGATTGGCATGTCTCTATCTTAG
LOC_Os05g09360
Os.9147.1.S1_s_at--67--6011Chr05:5227625..5227649 (25 bp)
GAGATCCAGGATCGTGCAGTTTATA
LOC_Os05g09360
Os.9147.1.S1_s_at--1027--6051Chr05:5227762..5227786 (25 bp)
GAGTTGATTCTTTTTCGGCCCGTCA
LOC_Os05g09360
Os.9147.1.S1_s_at--913--7251Chr05:5227838..5227862 (25 bp)
GTCCATTTGTTAACCTTGTGCAGTC
LOC_Os05g09360
Os.9147.1.S1_s_at--721--7152Chr05:5227860..5227884 (25 bp)
GTCTCAGATTTGGTTTCCTTGTACA
LOC_Os05g09360
Os.9147.1.S1_s_at--455--3591Chr05:5227904..5227928 (25 bp)
CATTCTTTGTAGGATCTGGACACCA
LOC_Os05g09360
Os.9147.1.S1_s_at--248--9591Chr05:5227987..5228011 (25 bp)
TCTTGTTCAGAACTTCTCCGAGTCT
LOC_Os05g09360
Target Sequence 
TGGCCTTTGCGTGTGGACTTGTGCATTACAAGTCTTCAGCCAAAAGGCATCCAAGCATGCANCCTTGGAATTTGGNCGGG
NNTGATACTAGCTGGTGGCTGTTCCCAACAGGACTTGTGTTATGTAAATGCATCCAAGCAAGACTTGTCGATTGGCATGT
CTCTATCTTAGAGATCCAGGATCGTGCAGTTTATAGCAATGACCCAACCATATTTTGGCAGTGATGGCATTTGTATCACT
GAATTGATCATCAGAGGTTTTGGCAACTCGAGTTTTTGGGAGTTGATAAAAAGGAAGGCTAGGGGATGAGTTGATTCTTT
TTCGGCCCGTCAGAGGAAGCGAAGTACACAAAGTACATTGCTTCTTACAGATGCATGCTTATAGTCCATTTGTTAACCTT
GTGCAGTCTCAGATTTGGTTTCCTTGTACATAAAAAGGTTTTATTGATCCATTCTTTGTAGGATCTGGACACCATAGAAT
TATAAACTTACCTGAGCTAATCATAGAGATGAGATGGTGGGGAAAGAATGTCTCTTGTTCAGAACTTCTCCGAGTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9147.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis