Browse Element(s) Details


OsAffx.4286.1.S1_at

Description tigr:9633.m00850
TID=OsAffx.4286.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0941011/11Histidine-containing phosphotransfer protein 4, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g09370Os.52103.1.S1_at11/115+5232274..5240161expressed protein
LOC_Os05g09370Os.10656.1.S1_at11/115+5232274..5240161expressed protein
LOC_Os05g09380Os.6365.1.S1_at11/115+5245044..5248797actin binding protein family, putative, expressed
LOC_Os05g09389OsAffx.14261.2.S1_at11/115+5252219..5253360Transposable element protein, putative, rve
LOC_Os05g09389OsAffx.14261.4.S1_x_at1/115+5252219..5253360Transposable element protein, putative, rve
LOC_Os05g09400Os.7914.2.S1_at11/115+5253550..5257112expressed protein
LOC_Os05g09400OsAffx.26384.8.S1_x_at11/115+5253550..5257112expressed protein
LOC_Os05g09400Os.7914.1.S1_at10/115+5253550..5257112expressed protein
LOC_Os05g09400Os.46102.1.S1_at10/115+5253550..5257112expressed protein
LOC_Os05g09410OsAffx.4286.1.S1_at11/115+5257925..5259624Histidine-containing phosphotransfer protein 4, putative
LOC_Os05g09420OsAffx.26798.1.S1_at8/115+5266074..5268258hypothetical protein
LOC_Os05g09430OsAffx.26799.1.S1_at11/115+5271925..5272683expressed protein
LOC_Os05g09440Os.9145.1.S1_at11/115+5272909..5276768NADP-dependent malic enzyme, chloroplast precursor, putative, expressed
LOC_Os05g09450OsAffx.14612.1.S1_at11/115+5281260..5282687hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0000160biological_processtwo-component signal transduction system (phosphorelay)
GO:0007165biological_processsignal transduction
GO:0009736biological_processcytokinin mediated signaling
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0004871molecular_functionsignal transducer activity
GO:0005515molecular_functionprotein binding
GO:0009927molecular_functionhistidine phosphotransfer kinase activity
GO:0016772molecular_functiontransferase activity, transferring phosphorus-containing groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4286.1.S1_at--481--5011Chr05:5258820..5258844 (25 bp)
GCAGGATGAATCAAGCCCCAATTTT
LOC_Os05g09410
OsAffx.4286.1.S1_at--85--2831Chr05:5258788..5258812 (25 bp)
AAGTTGCGGCTCTGTTCTTCAAAGA
LOC_Os05g09410
OsAffx.4286.1.S1_at--821--3091Chr05:5258608..5258632 (25 bp)
AATACCCTCAGGATTTCTACAGATT
LOC_Os05g09410
OsAffx.4286.1.S1_at--628--6571Chr05:5258582..5258606 (25 bp)
GATTCTCTTGTGCAACAACTCAAAG
LOC_Os05g09410
OsAffx.4286.1.S1_at--542--3291Chr05:5258319..5258586 (25 bp)
CAAAGGCAGCGGATCCAGCATTGGT
LOC_Os05g09410
OsAffx.4286.1.S1_at--751--5271Chr05:5258280..5258304 (25 bp)
GAATGAGTGCTCTGTGTTCAAAGTA
LOC_Os05g09410
OsAffx.4286.1.S1_at--528--591Chr05:5258131..5258155 (25 bp)
ATGCCGCAGGTCTCTTCAGAAGATG
LOC_Os05g09410
OsAffx.4286.1.S1_at--36--7651Chr05:5258102..5258126 (25 bp)
GGGAGCATGCCACTCTGAAGCAGAA
LOC_Os05g09410
OsAffx.4286.1.S1_at--514--8211Chr05:5258021..5258098 (25 bp)
GGAATCATATTTTCAGCATTGCTAC
LOC_Os05g09410
OsAffx.4286.1.S1_at--118--2471Chr05:5257989..5258013 (25 bp)
AACAACTTGGTTATCTCCTGTTCCT
LOC_Os05g09410
OsAffx.4286.1.S1_at--943--6691Chr05:5257970..5257994 (25 bp)
GTTCCTTCTGCTGATGCAGTTACTG
LOC_Os05g09410
Target Sequence 
GCAGGATGAATCAAGCCCCAATTTTGTTGAGGAAGTTGCGGCTCTGTTCTTCAAAGATTCATCAAGACTGTTGACAAATA
TAGAACAAGCAATTGATAAATACCCTCAGGATTTCTACAGATTAGATTCTCTTGTGCAACAACTCAAAGGCAGCGGATCC
AGCATTGGTGCACTGAGGATGAAGAATGAGTGCTCTGTGTTCAAAGTAAACTGCAATGACAGGAATCTGGAAGGATGCCG
CAGGTCTCTTCAGAAGATGAAGAGGGAGCATGCCACTCTGAAGCAGAAGCTGGAATCATATTTTCAGCATTGCTACATGG
CTAAACAACTTGGTTATCTCCTGTTCCTTCTGCTGATGCAGTTACTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4286.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis