Browse Element(s) Details


OsAffx.26798.1.S1_at

Description tigr:9633.m00851
TID=OsAffx.26798.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g094208/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g09380Os.6365.1.S1_at11/115+5245044..5248797actin binding protein family, putative, expressed
LOC_Os05g09389OsAffx.14261.2.S1_at11/115+5252219..5253360Transposable element protein, putative, rve
LOC_Os05g09389OsAffx.14261.4.S1_x_at1/115+5252219..5253360Transposable element protein, putative, rve
LOC_Os05g09400Os.7914.2.S1_at11/115+5253550..5257112expressed protein
LOC_Os05g09400OsAffx.26384.8.S1_x_at11/115+5253550..5257112expressed protein
LOC_Os05g09400Os.7914.1.S1_at10/115+5253550..5257112expressed protein
LOC_Os05g09400Os.46102.1.S1_at10/115+5253550..5257112expressed protein
LOC_Os05g09410OsAffx.4286.1.S1_at11/115+5257925..5259624Histidine-containing phosphotransfer protein 4, putative
LOC_Os05g09420OsAffx.26798.1.S1_at8/115+5266074..5268258hypothetical protein
LOC_Os05g09430OsAffx.26799.1.S1_at11/115+5271925..5272683expressed protein
LOC_Os05g09440Os.9145.1.S1_at11/115+5272909..5276768NADP-dependent malic enzyme, chloroplast precursor, putative, expressed
LOC_Os05g09450OsAffx.14612.1.S1_at11/115+5281260..5282687hypothetical protein
LOC_Os05g09460OsAffx.4287.1.S1_at9/115+5289032..5291296hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26798.1.S1_at--1021--9431Chr05:5268185..5268209 (25 bp)
TCGGACCAGGGCCAAGAACAGTTGT
LOC_Os05g09420
OsAffx.26798.1.S1_at--1038--10731Chr05:5268161..5268185 (25 bp)
TTGAACACGCGGTTGTTCCGTTCCT
LOC_Os05g09420
OsAffx.26798.1.S1_at--323--10273Chr12:6344246..6344265 (20 bp)
TTCCGTTCCTTCCAAATGGACCACG
NONE
OsAffx.26798.1.S1_at--930--5811Chr05:5268108..5268132 (25 bp)
GACCGTGTCGAATCCACAACGATGC
LOC_Os05g09420
OsAffx.26798.1.S1_at--734--4392Chr07:23936305..23936327 (23 bp)
GCCACTCGTGGAAGGAAACATCGCT
NONE
OsAffx.26798.1.S1_at--571--5751NONE
GACGGTCCACCACAGCTGAAAATTA
NONE
OsAffx.26798.1.S1_at--891--3011Chr05:5266679..5266703 (25 bp)
AATGCTATTGTGTTATCCCTGTCAG
LOC_Os05g09420
OsAffx.26798.1.S1_at--896--7411Chr05:5266670..5266694 (25 bp)
GTGTTATCCCTGTCAGCCAGTAAGC
LOC_Os05g09420
OsAffx.26798.1.S1_at--667--7351Chr05:5266117..5266141 (25 bp)
GTGAAAGGATTTGCGTCCACCTGCA
LOC_Os05g09420
OsAffx.26798.1.S1_at--111--9831Chr05:5266052..5266076 (25 bp)
TAACAAGTTCACAAGCACTCTGGAA
NONE
OsAffx.26798.1.S1_at--137--5111Chr05:5266038..5266062 (25 bp)
GCACTCTGGAAACTGCTGCGTTATC
NONE
Target Sequence 
TCGGACCAGGGCCAAGAACAGTTGTTGAACACGCGGTTGTTCCGTTCCTTCCAAATGGACCACGCCCCAAGGGTCACGAC
CGTGTCGAATCCACAACGATGCTCCCTCGGAACTTTGAGTCGGCGGGAGCAGTGCCACTCGTGGAAGGAAACATCGCTAG
AGAGGAAGCAATGTGGGAGCCCGAGGCTCGAGAGGACGGTCCACCACAGCTGAAAATTAGTAAGATTAGTGTTAATGCTA
TTGTGTTATCCCTGTCAGCCAGTAAGCAAAATCTAGAATGGTATGATGTTCTTGAAGTTTGTATGGTTACTATAAAAGCA
CAATTGGTTTCCATTTTTGTTTTCGTGGAGAAGGATGAGTTGATTCTTCTTATGTCATTTGTGAAAGGATTTGCGTCCAC
CTGCAAAGGCAGCAACTGGAGATACCGAGAAATGGGAGGGGCACTTAACAAGTTCACAAGCACTCTGGAAACTGCTGCGT
TATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26798.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis