Browse Element(s) Details


OsAffx.26384.8.S1_x_at

Description gb:AK058658.1
DB_XREF= gi:32968676
TID=OsAffx.26384.8
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-018-F10, full insert sequence.
FL= gb:AK058658.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0940011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g09370Os.52103.1.S1_at11/115+5232274..5240161expressed protein
LOC_Os05g09370Os.10656.1.S1_at11/115+5232274..5240161expressed protein
LOC_Os05g09380Os.6365.1.S1_at11/115+5245044..5248797actin binding protein family, putative, expressed
LOC_Os05g09389OsAffx.14261.2.S1_at11/115+5252219..5253360Transposable element protein, putative, rve
LOC_Os05g09389OsAffx.14261.4.S1_x_at1/115+5252219..5253360Transposable element protein, putative, rve
LOC_Os05g09400Os.7914.2.S1_at11/115+5253550..5257112expressed protein
LOC_Os05g09400OsAffx.26384.8.S1_x_at11/115+5253550..5257112expressed protein
LOC_Os05g09400Os.7914.1.S1_at10/115+5253550..5257112expressed protein
LOC_Os05g09400Os.46102.1.S1_at10/115+5253550..5257112expressed protein
LOC_Os05g09410OsAffx.4286.1.S1_at11/115+5257925..5259624Histidine-containing phosphotransfer protein 4, putative
LOC_Os05g09420OsAffx.26798.1.S1_at8/115+5266074..5268258hypothetical protein
LOC_Os05g09430OsAffx.26799.1.S1_at11/115+5271925..5272683expressed protein
LOC_Os05g09440Os.9145.1.S1_at11/115+5272909..5276768NADP-dependent malic enzyme, chloroplast precursor, putative, expressed
LOC_Os05g09450OsAffx.14612.1.S1_at11/115+5281260..5282687hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0005840cellular_componentribosome
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26384.8.S1_x_at--675--4131Chr05:5256887..5256907 (21 bp)
CGCTCACTCCAGTTCTTGAAGTTTA
LOC_Os05g09400
OsAffx.26384.8.S1_x_at--915--1011Chr05:5256603..5256627 (25 bp)
AGGTTCAACCACTCGTACGGAAATG
LOC_Os05g09400
OsAffx.26384.8.S1_x_at--12--2751Chr05:5256441..5256465 (25 bp)
AAGAAGGGAACTGGCCCTGCACGGC
LOC_Os05g09400
OsAffx.26384.8.S1_x_at--118--9171Chr05:5256403..5256427 (25 bp)
TGCGCCTCCGAGGAAGGACCAGTTC
LOC_Os05g09400
OsAffx.26384.8.S1_x_at--500--5671Chr05:5256354..5256378 (25 bp)
GACATCGACGATGACATCCTGGAAT
LOC_Os05g09400
OsAffx.26384.8.S1_x_at--377--9971Chr05:5256295..5256319 (25 bp)
TACCTTGAGCTTACCTTTTGTCTAG
LOC_Os05g09400
OsAffx.26384.8.S1_x_at--890--7151Chr05:5256276..5256300 (25 bp)
GTCTAGTCTGTACCAAACACTGTTT
LOC_Os05g09400
OsAffx.26384.8.S1_x_at--151--7031Chr05:5256235..5256259 (25 bp)
GTACATTACATGGTCTCATTCTACA
LOC_Os05g09400
OsAffx.26384.8.S1_x_at--578--6351Chr05:5256203..5256227 (25 bp)
GATGCCTATGATTTCTTTCCTTGTA
LOC_Os05g09400
OsAffx.26384.8.S1_x_at--42--7771Chr05:5256166..5256190 (25 bp)
GGTGCTGCTTAGAGTCATTTTTTAT
LOC_Os05g09400
OsAffx.26384.8.S1_x_at--783--3371Chr05:5256102..5256126 (25 bp)
CACCAAACTTTCATGTTCTTGCTAG
LOC_Os05g09400
Target Sequence 
CGCTCACTCCAGTTCTTGAAGTTTACTGCGGGAGAGGGGACAAGAAGACCAAGAGGGGAAAAAGGTTCAACCACTCGTAC
GGAAATGCGAGGCCGCGCAACAAGAAGAAGGGAACTGGCCCTGCACGGCTGTTCGCGCCGCCTGCGCCTCCGAGGAAGGA
CCAGTTCGACGACGGCGAGGTCACCCCGATCGACATCGACGATGACATCCTGGAATAGGTTGTCTGAATTTCCCCCCTTG
AATTATGGTTTACCTTGAGCTTACCTTTTGTCTAGTCTGTACCAAACACTGTTTCTTGAAATTAATTACAGTACATTACA
TGGTCTCATTCTACATAATGTAGATGCCTATGATTTCTTTCCTTGTAATATATATGAATGGTGCTGCTTAGAGTCATTTT
TTATGCATTACCAGCTGAAGCAGAACATAAGTACAGATACAATCACCAAACTTTCATGTTCTTGCTAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26384.8.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis