Browse Element(s) Details


OsAffx.14612.1.S1_at

Description tigr:9633.m00854
TID=OsAffx.14612.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0945011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g09400Os.7914.2.S1_at11/115+5253550..5257112expressed protein
LOC_Os05g09400OsAffx.26384.8.S1_x_at11/115+5253550..5257112expressed protein
LOC_Os05g09400Os.7914.1.S1_at10/115+5253550..5257112expressed protein
LOC_Os05g09400Os.46102.1.S1_at10/115+5253550..5257112expressed protein
LOC_Os05g09410OsAffx.4286.1.S1_at11/115+5257925..5259624Histidine-containing phosphotransfer protein 4, putative
LOC_Os05g09420OsAffx.26798.1.S1_at8/115+5266074..5268258hypothetical protein
LOC_Os05g09430OsAffx.26799.1.S1_at11/115+5271925..5272683expressed protein
LOC_Os05g09440Os.9145.1.S1_at11/115+5272909..5276768NADP-dependent malic enzyme, chloroplast precursor, putative, expressed
LOC_Os05g09450OsAffx.14612.1.S1_at11/115+5281260..5282687hypothetical protein
LOC_Os05g09460OsAffx.4287.1.S1_at9/115+5289032..5291296hypothetical protein
LOC_Os05g09470OsAffx.8965.1.S1_at1/115+5298616..5301279hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14612.1.S1_at--1082--3471Chr05:5281914..5282294 (25 bp)
CAGGATGCATATGGCTACGGCCATA
LOC_Os05g09450
OsAffx.14612.1.S1_at--644--8492Chr05:5281925..5282305 (25 bp)
TGGCTACGGCCATAGTATATATATT
LOC_Os05g09450
OsAffx.14612.1.S1_at--695--10211Chr05:5282302..5282326 (25 bp)
TATTATATTACATGCTTTTTGCCCC
LOC_Os05g09450
OsAffx.14612.1.S1_at--503--10632Chr05:5282344..5282368 (25 bp)
TTCCCGGAAGGCTCCTGTGAGTTGC
LOC_Os05g09450
OsAffx.14612.1.S1_at--835--9272Chr05:5282356..5282380 (25 bp)
TCCTGTGAGTTGCTTCTTTCTAGAG
LOC_Os05g09450
OsAffx.14612.1.S1_at--1094--8892Chr05:5282361..5282385 (25 bp)
TGAGTTGCTTCTTTCTAGAGTTCAA
LOC_Os05g09450
OsAffx.14612.1.S1_at--887--10031Chr05:5282376..5282400 (25 bp)
TAGAGTTCAATTACCATGTTGGCGC
LOC_Os05g09450
OsAffx.14612.1.S1_at--391--1731Chr05:5282388..5282412 (25 bp)
ACCATGTTGGCGCTTTATCTTCAAC
LOC_Os05g09450
OsAffx.14612.1.S1_at--1064--9551Chr05:5282405..5282429 (25 bp)
TCTTCAACACCATGGACGAATTTAC
LOC_Os05g09450
OsAffx.14612.1.S1_at--498--6471Chr05:5282486..5282571 (25 bp)
GATAACACTTTTAAGGTGCCACTCA
LOC_Os05g09450
OsAffx.14612.1.S1_at--948--2871Chr05:5282560..5282583 (24 bp)
AAGGTGCCACTCACAAATTGTTCAA
LOC_Os05g09450
Target Sequence 
CAGGATGCATATGGCTACGGCCATAGTATATATATTATATTACATGCTTTTTGCCCCTTATTTGGTTCCCTTCCTTCCCG
GAAGGCTCCTGTGAGTTGCTTCTTTCTAGAGTTCAATTACCATGTTGGCGCTTTATCTTCAACACCATGGACGAATTTAC
TATGCCATGTCCTAAGAAGGTTATGCATGACAAGAAGGTATCTTCAAGTTTATGAAGATAACACTTTTAAGGTGCCACTC
ACAAATTGTTCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14612.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis