Browse Element(s) Details


Os.10662.1.S1_at

Description gb:AU077642
DB_XREF= gi:5667400
DB_XREF=AU077642
CLONE=E30706_8Z
TID=Os.10662.1
CNT=11
FEA=mRNA
TIER=Stack
STK=6
UG=Os.10662 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unnamed protein product (Gene), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1532011/11Rapid ALkalinization Factor family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g15280Os.20602.2.S1_x_at11/111+8547101..8549448hAT family dimerisation domain containing protein, expressed
LOC_Os01g15290Os.51824.1.S1_at10/111+8552091..855394850S ribosomal protein L18, putative, expressed
LOC_Os01g15300Os.49825.1.S1_at11/111+8557427..8566431zinc finger helicase family protein, putative, expressed
LOC_Os01g15300Os.197.2.S1_x_at11/111+8557427..8566431zinc finger helicase family protein, putative, expressed
LOC_Os01g15310Os.197.1.S1_a_at9/111+8567682..8571357U6 snRNA-associated Sm-like protein LSm4, putative, expressed
LOC_Os01g15320Os.10662.1.S1_at11/111+8574045..8574725Rapid ALkalinization Factor family protein, expressed
LOC_Os01g15330OsAffx.22218.1.S1_at11/111+8581619..8582171hypothetical protein
LOC_Os01g15340Os.487.1.S1_at11/111+8582959..8583743FPF1 protein, putative, expressed
LOC_Os01g15350Os.9029.2.S1_x_at11/111+8590594..8596216Zinc finger CCCH type domain containing protein ZFN-like 3, putative, expressed
LOC_Os01g15350Os.9029.1.S1_at11/111+8590594..8596216Zinc finger CCCH type domain containing protein ZFN-like 3, putative, expressed
LOC_Os01g15350Os.9029.1.S1_a_at11/111+8590594..8596216Zinc finger CCCH type domain containing protein ZFN-like 3, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0007267biological_processcell-cell signaling
GO:0048046cellular_componentapoplast
GO:0004871molecular_functionsignal transducer activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10662.1.S1_at--476--9211Chr01:8574232..8574256 (25 bp)
TCCAATGCCATGTAGTTCGCAGCAA
LOC_Os01g15320
Os.10662.1.S1_at--1140--10631Chr01:8574217..8574241 (25 bp)
TTCGCAGCAAGAACACACGCACAGT
LOC_Os01g15320
Os.10662.1.S1_at--755--2131Chr01:8574197..8574221 (25 bp)
ACAGTGTCCCCTTGATCATAGCTGA
LOC_Os01g15320
Os.10662.1.S1_at--295--7251Chr01:8574192..8574216 (25 bp)
GTCCCCTTGATCATAGCTGAGCTTA
LOC_Os01g15320
Os.10662.1.S1_at--743--4751Chr01:8574177..8574201 (25 bp)
GCTGAGCTTATATGCTATAGCTGTC
LOC_Os01g15320
Os.10662.1.S1_at--954--4871Chr01:8574164..8574188 (25 bp)
GCTATAGCTGTCAAGATCTCAGTGT
LOC_Os01g15320
Os.10662.1.S1_at--751--1111Chr01:8574144..8574168 (25 bp)
AGTGTTGTCCTTGCATGCCTCTCAT
LOC_Os01g15320
Os.10662.1.S1_at--1097--4451Chr01:8574128..8574152 (25 bp)
GCCTCTCATGCTTGATTGATTAGAT
LOC_Os01g15320
Os.10662.1.S1_at--419--1311Chr01:8574107..8574131 (25 bp)
AGATGTGTAATGGTCCTAATGGATG
LOC_Os01g15320
Os.10662.1.S1_at--618--10791Chr01:8574075..8574099 (25 bp)
TTGTTTGCTATGCTGCTTGGGTGAA
LOC_Os01g15320
Os.10662.1.S1_at--391--4871Chr01:8574069..8574093 (25 bp)
GCTATGCTGCTTGGGTGAAATTAAA
LOC_Os01g15320
Target Sequence 
TCCAATGCCATGTAGTTCGCAGCAAGAACACACGCACAGTGTCCCCTTGATCATAGCTGAGCTTATATGCTATAGCTGTC
AAGATCTCAGTGTTGTCCTTGCATGCCTCTCATGCTTGATTGATTAGATGTGTAATGGTCCTAATGGATGGATGGTGTTG
TTTGCTATGCTGCTTGGGTGAAATTAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10662.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis