Browse Element(s) Details


Os.10673.1.S1_at

Description gb:AK099473.1
DB_XREF= gi:32984682
TID=Os.10673.1
CNT=21
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.10673 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013024D11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013024D11, full insert sequence.
FL= gb:AK099473.1 gb:AK060070.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0565011/11ACT domain-containing protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g05600Os.52940.1.S1_at11/1112+2570685..2572881hydrolase, alpha/beta fold family protein, putative, expressed
LOC_Os12g05609OsAffx.31600.1.S1_at11/1112+2573327..2574586F-box domain containing protein
LOC_Os12g05620OsAffx.19507.1.S1_at10/1112+2582896..2585408hypothetical protein
LOC_Os12g05630NANA12+2587415..2588307hydrolase, alpha/beta fold family protein, putative
LOC_Os12g05640OsAffx.31598.1.S1_at11/1112+2591074..2593791Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os12g05650Os.10673.1.S1_at11/1112+2594377..2599052ACT domain-containing protein, putative, expressed
LOC_Os12g05670OsAffx.31599.1.S1_at11/1112+2601226..2601649hypothetical protein
LOC_Os12g05660Os.23162.1.S1_a_at11/1112+2601354..2606898Dual specificity phosphatase, catalytic domain containing protein, expressed
LOC_Os12g05660Os.23162.1.S2_at11/1112+2601354..2606898Dual specificity phosphatase, catalytic domain containing protein, expressed
LOC_Os12g05660OsAffx.4983.1.S1_at1/1112+2601354..2606898Dual specificity phosphatase, catalytic domain containing protein, expressed
LOC_Os12g05680Os.54058.1.S1_at10/1112+2604798..2611491TGACG-sequence-specific DNA-binding protein TGA-2.1, putative, expressed
LOC_Os12g05690Os.55494.1.S1_at11/1112+2621162..2622107expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10673.1.S1_at--13--1591Chr12:2594928..2595045 (25 bp)
AGCTCATTATCTCAGGTGCTCGTGA
LOC_Os12g05650
Os.10673.1.S1_at--244--3171Chr12:2594904..2594928 (25 bp)
AATTGCTTGCGTTATTATCTCCGGA
LOC_Os12g05650
Os.10673.1.S1_at--441--3871Chr12:2594854..2594878 (25 bp)
CTGATTCTTATGAAAACCCGGGCTT
LOC_Os12g05650
Os.10673.1.S1_at--70--3991Chr12:2594836..2594860 (25 bp)
CGGGCTTTGAGTTCCTTTCTGCAAG
LOC_Os12g05650
Os.10673.1.S1_at--507--10311Chr12:2594821..2594845 (25 bp)
TTTCTGCAAGCCCATTGTGCTGATT
LOC_Os12g05650
Os.10673.1.S1_at--752--10251Chr12:2594764..2594788 (25 bp)
TTTGTCCTCAAAATGCATCCGTATA
LOC_Os12g05650
Os.10673.1.S1_at--249--6051Chr12:2594696..2594720 (25 bp)
GAGATTCAGCTCAATATGGCCCGTT
LOC_Os12g05650
Os.10673.1.S1_at--794--271Chr12:2594683..2594707 (25 bp)
ATATGGCCCGTTATCATCACCATTG
LOC_Os12g05650
Os.10673.1.S1_at--569--391Chr12:2594668..2594692 (25 bp)
ATCACCATTGGTTCCTACAGTAGTA
LOC_Os12g05650
Os.10673.1.S1_at--811--9671Chr12:2594615..2594639 (25 bp)
TCACCTGATGGATGCTGTCTGTAAT
LOC_Os12g05650
Os.10673.1.S1_at--255--9251Chr12:2594589..2594613 (25 bp)
TCCTATAATTCGCTTGAACCTGTCG
LOC_Os12g05650
Target Sequence 
AGCTCATTATCTCAGGTGCTCGTGAATTGCTTGCGTTATTATCTCCGGAGGCCCGAGACAGATGAAGACAGCTACTGATT
CTTATGAAAACCCGGGCTTTGAGTTCCTTTCTGCAAGCCCATTGTGCTGATTTTTCGGTTGTAGTGAACAAAAAACGTGG
TACATTTGTCCTCAAAATGCATCCGTATATTATGCTTTACGTAGGATGCATTTAAAATCGGGCCAGATCCGGGAGATTCA
GCTCAATATGGCCCGTTATCATCACCATTGGTTCCTACAGTAGTAGAGGAATCACATTGGGACTGGGAGGCCATCACCTG
ATGGATGCTGTCTGTAATTTCCTATAATTCGCTTGAACCTGTCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10673.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis