Browse Element(s) Details


Os.10682.1.S1_at

Description gb:AK109215.1
DB_XREF= gi:32994424
TID=Os.10682.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.10682 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-156-D09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-156-D09, full insert sequence.
FL= gb:AK109215.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g059606/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g05940Os.36679.1.S1_at11/118+3217882..3223078transposon protein, putative, unclassified, expressed
LOC_Os08g05940OsAffx.18625.2.S1_at11/118+3217882..3223078transposon protein, putative, unclassified, expressed
LOC_Os08g05940OsAffx.18625.2.S1_x_at11/118+3217882..3223078transposon protein, putative, unclassified, expressed
LOC_Os08g05950NANA8+3233284..3233839hypothetical protein
LOC_Os08g05960Os.10682.1.S1_at6/118+3236459..3237086expressed protein
LOC_Os08g05970OsAffx.16847.1.S1_s_at11/118+3238105..3238711expressed protein
LOC_Os08g05980NANA8+3241972..3242205expressed protein
LOC_Os08g05990Os.40855.5.S1_x_at10/118+3247833..3250578hypothetical protein
LOC_Os08g05990Os.40360.1.S1_at9/118+3247833..3250578hypothetical protein
LOC_Os08g05990Os.40360.1.S1_x_at8/118+3247833..3250578hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10682.1.S1_at--759--371Chr08:3236506..3236533 (25 bp)
ATCACTTACAGTGCAAATCAAGCTG
LOC_Os08g05960
Os.10682.1.S1_at--1087--4731Chr08:3236530..3236554 (25 bp)
GCTGATTTCATCAGACAAATTTCAC
LOC_Os08g05960
Os.10682.1.S1_at--91--2531NONE
AACTAGCTTAGCTGCCGTAGAGCCG
NONE
Os.10682.1.S1_at--240--4511Chr08:3236575..3236603 (25 bp)
GCCGTAGAGCCGTGTGCGATCAAGA
LOC_Os08g05960
Os.10682.1.S1_at--523--4591NONE
GCGATCAAGATCGTATCATCCATGG
NONE
Os.10682.1.S1_at--315--9231Chr08:3236612..3236636 (25 bp)
TCCATGGCGTTCTACAAGTACGGCT
LOC_Os08g05960
Os.10682.1.S1_at--78--6731Chr08:3236620..3236644 (25 bp)
GTTCTACAAGTACGGCTTCGCCTTC
LOC_Os08g05960
Os.10682.1.S1_at--622--551NONE
ATCCGAAGGCCAAGAAAGGCAGCAA
NONE
Os.10682.1.S1_at--615--10831NONE
TTGTGCTTGTTTAGCTCTGTACTCG
NONE
Os.10682.1.S1_at--628--3791Chr08:3237028..3237052 (25 bp)
CTCGTTATCCTGTTGTGTGTATTGA
LOC_Os08g05960
Os.10682.1.S1_at--100--10191NONE
TATACATATATACCTCTCTGTTGTT
NONE
Target Sequence 
ATCACTTACAGTGCAAATCAAGCTGATTTCATCAGACAAATTTCACTAATAACTAGCTTAGCTGCCGTAGAGCCGTGTGC
GATCAAGATCGTATCATCCATGGCGTTCTACAAGTACGGCTTCGCCTTCTTGGCCGGCACCGGCTTCGGCGCCGCGCTCA
CCAGCCTCCGCCGCGACGGCGACAGCTGCTGCCCCATGCGCCGCCGCCGCCGCCGCTGTCGCCGCCACCACCACGACGAC
GACGACCAGCTGGTCGACGGCGACGGCGACGGCGAGGCTGCAGGGGAAGAGCGAGACANGAAGGAGAGCAAGAGGGCGAC
GACGACGACGAATCCGAAGGCCAAGAAAGGCAGCAACAAGGAGAAGAAGGCAGCTGCTAGTGTTGCTAGGGAGGAGGAGG
ATGACGATGATGAATAGGATTAATTTGAGTTGATTATTAATTAAGTTCAGTTTGAGTTCAGCTATTATATATTTTTAGGT
GCTTGATTCCGTTGCTGNGCCAGTTTAATTGTGCTTGTTTAGCTCTGTACTCGTTATCCTGTTGTGTGTATTGACAAAAA
TAAGAGAATATACATATATACCTCTCTGTTGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10682.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis