Browse Element(s) Details


OsAffx.16847.1.S1_s_at

Description tigr:9636.m00528
TID=OsAffx.16847.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0597011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g05940Os.36679.1.S1_at11/118+3217882..3223078transposon protein, putative, unclassified, expressed
LOC_Os08g05940OsAffx.18625.2.S1_at11/118+3217882..3223078transposon protein, putative, unclassified, expressed
LOC_Os08g05940OsAffx.18625.2.S1_x_at11/118+3217882..3223078transposon protein, putative, unclassified, expressed
LOC_Os08g05950NANA8+3233284..3233839hypothetical protein
LOC_Os08g05960Os.10682.1.S1_at6/118+3236459..3237086expressed protein
LOC_Os08g05970OsAffx.16847.1.S1_s_at11/118+3238105..3238711expressed protein
LOC_Os08g05980NANA8+3241972..3242205expressed protein
LOC_Os08g05990Os.40855.5.S1_x_at10/118+3247833..3250578hypothetical protein
LOC_Os08g05990Os.40360.1.S1_at9/118+3247833..3250578hypothetical protein
LOC_Os08g05990Os.40360.1.S1_x_at8/118+3247833..3250578hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16847.1.S1_s_at--542--3851Chr08:3238138..3238162 (25 bp)
CTGACACAAACATATATACTTACAT
LOC_Os08g05970
OsAffx.16847.1.S1_s_at--975--231Chr08:3238175..3238199 (25 bp)
ATATATAGGTGGTTAGCTACCTGTA
LOC_Os08g05970
OsAffx.16847.1.S1_s_at--271--7891Chr08:3238185..3238209 (25 bp)
GGTTAGCTACCTGTATAGTTTATAC
LOC_Os08g05970
OsAffx.16847.1.S1_s_at--1084--6811Chr08:3238202..3238226 (25 bp)
GTTTATACATTAGCTAGCGTATGTG
LOC_Os08g05970
OsAffx.16847.1.S1_s_at--693--8811Chr08:3238225..3238249 (25 bp)
TGTTGTTGTTGATCATCGATCGCCG
LOC_Os08g05970
OsAffx.16847.1.S1_s_at--268--1291Chr08:3238264..3238288 (25 bp)
AGATCGATCCACGATGGGTTGCCTG
LOC_Os08g05970
OsAffx.16847.1.S1_s_at--22--591Chr08:3238270..3238294 (25 bp)
ATCCACGATGGGTTGCCTGCTGCGG
LOC_Os08g05970
OsAffx.16847.1.S1_s_at--220--10391Chr08:3238548..3238572 (25 bp)
TTTTCTATGAAAACGAGCAGCTAGT
LOC_Os08g05970
OsAffx.16847.1.S1_s_at--500--2591Chr08:3238559..3238583 (25 bp)
AACGAGCAGCTAGTGTGTATGATAT
LOC_Os08g05970
OsAffx.16847.1.S1_s_at--125--8211Chr08:3238594..3238618 (25 bp)
GGAATGTTCTTATGTGTACACGTAA
LOC_Os08g05970
OsAffx.16847.1.S1_s_at--430--9511Chr08:3238623..3238647 (25 bp)
TATACGTAAACCTTATTTGTACTGT
LOC_Os08g05970
Target Sequence 
CTGACACAAACATATATACTTACATATAAATACAGATATATATAGGTGGTTAGCTACCTGTATAGTTTATACATTAGCTA
GCGTATGTGTTGTTGTTGATCATCGATCGCCGGCGACGACAGGGAGAGATCGATCCACGATGGGTTGCCTGCTGCGGCGG
CTGTTCCCGTTCCTGGTCGGCACGGCGGTGGGCGTGTACGCGGCGCAGAATTACAAGGTCCCCAACCTCCGGGGCCTCGC
CGACCGCGGCGTCGACGCCGCCAAGCACTACGAGGAGGCCTACCGCAAGAAGCCCTCCGCCGGCGGCGGCGGCGGCGGGA
GCAGGAAGAAGATGAACAAGACCGTCGAGATCGACGACGACGAGGAGTAAATTAGTTGATACTGCTAGTGCTAGCTCACT
AGTTATTACATTTTCTATGAAAACGAGCAGCTAGTGTGTATGATATGTAAATTATTGGAATGTTCTTATGTGTACACGTA
AAACTTATACGTAAACCTTATTTGTACTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16847.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis