Browse Element(s) Details


Os.36679.1.S1_at

Description gb:AK062907.1
DB_XREF= gi:32972925
TID=Os.36679.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.36679 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-108-F11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-108-F11, full insert sequence.
FL= gb:AK062907.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0594011/11transposon protein, putative, unclassified, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g05930Os.10703.2.S1_x_at1/118+3193079..3198727retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g05940Os.36679.1.S1_at11/118+3217882..3223078transposon protein, putative, unclassified, expressed
LOC_Os08g05940OsAffx.18625.2.S1_at11/118+3217882..3223078transposon protein, putative, unclassified, expressed
LOC_Os08g05940OsAffx.18625.2.S1_x_at11/118+3217882..3223078transposon protein, putative, unclassified, expressed
LOC_Os08g05950NANA8+3233284..3233839hypothetical protein
LOC_Os08g05960Os.10682.1.S1_at6/118+3236459..3237086expressed protein
LOC_Os08g05970OsAffx.16847.1.S1_s_at11/118+3238105..3238711expressed protein
LOC_Os08g05980NANA8+3241972..3242205expressed protein
LOC_Os08g05990Os.40855.5.S1_x_at10/118+3247833..3250578hypothetical protein
LOC_Os08g05990Os.40360.1.S1_at9/118+3247833..3250578hypothetical protein
LOC_Os08g05990Os.40360.1.S1_x_at8/118+3247833..3250578hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.36679.1.S1_at--1157--9011Chr08:3218231..3218255 (25 bp)
TGCACCGACTTTTCCAGTTTTTGTT
LOC_Os08g05940
Os.36679.1.S1_at--253--7071Chr08:3218184..3218208 (25 bp)
GTAAGTTTCCTTGTGCTGCTAATAG
LOC_Os08g05940
Os.36679.1.S1_at--113--9631Chr08:3218148..3218172 (25 bp)
TCATGTACTCATGTATGACTTGTCC
LOC_Os08g05940
Os.36679.1.S1_at--743--8091Chr08:3218113..3218137 (25 bp)
GGACCTTAACTTTTACGCATGCTTT
LOC_Os08g05940
Os.36679.1.S1_at--205--10351Chr08:3218102..3218126 (25 bp)
TTTACGCATGCTTTGAAGCTGCTCT
LOC_Os08g05940
Os.36679.1.S1_at--103--5411Chr08:3218088..3218112 (25 bp)
GAAGCTGCTCTTTTTATCATAGGAC
LOC_Os08g05940
Os.36679.1.S1_at--340--10411Chr08:3218075..3218099 (25 bp)
TTATCATAGGACTCAATGCCAATAT
LOC_Os08g05940
Os.36679.1.S1_at--407--591Chr08:3218060..3218084 (25 bp)
ATGCCAATATCCATCGAGTGCCATG
LOC_Os08g05940
Os.36679.1.S1_at--659--6111Chr08:3218045..3218069 (25 bp)
GAGTGCCATGGCTCGATGGAATTAT
LOC_Os08g05940
Os.36679.1.S1_at--25--7071Chr08:3218011..3218035 (25 bp)
GTAAGACTCTTGTCTGCCATTAGAG
LOC_Os08g05940
Os.36679.1.S1_at--739--4731Chr08:3217968..3217992 (25 bp)
GCTGTCTTGGACTTTTGGCATGTTA
LOC_Os08g05940
Target Sequence 
TGCACCGACTTTTCCAGTTTTTGTTTGGTTGATGAATTATCTCAATAGTAAGTTTCCTTGTGCTGCTAATAGCAGCGAGG
GTNTCATGTACTCATGTATGACTTGTCCNCCAAAGAAAGGACCTTAACTTTTACGCATGCTTTGAAGCTGCTCTTTTTAT
CATAGGACTCAATGCCAATATCCATCGAGTGCCATGGCTCGATGGAATTATGCTNAAGTTGTAAGACTCTTGTCTGCCAT
TAGAGCTAAATNTTCTNTGAATTGCTGTCTTGGACTTTTGGCATGTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.36679.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis